1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaatatggtttgtgatttcaatcatttcatagattcttgtttgaaaataacaatctttttctgattgttttgtttatgtgacacaactgcagCGAAAGACCGATGACTCAGGTAGAAGAAAAACCGGTTCACCGCCAGAGATTCGGTCTCTTGAG
species | Arabidopsis thaliana |
transcript | AT3G27350.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACTATCCCTCCGAAATCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAG CGAAAGACCGATGACTEST: gi|164117013|gb|ES045524.1|ES045524
genomic: ACTATCCCTCCGAAATCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAGgtaatatggt ... acaactgcagCGAAAGACCGATGACT
EST: CCCTCCGAAATCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAG CGAAAGACCGATGACTCAGGTAGAAGAAAAACCGGTTCACCGCCAGAGATTEST: gi|124792039|gb|EH881718.1|EH881718
genomic: CCCTCCGAAATCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAGgtaatatggt ... acaactgcagCGAAAGACCGATGACTCAGGTAGAAGAAAAACCGGTTCACCGCCAGAGATT
EST: ACTATCCCTCCGAAATCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAG CGAAAGACCGATGACTCAGGTAGAAGAAAAACCGGTTCACCGEST: gi|125129716|gb|EL173334.1|EL173334
genomic: ACTATCCCTCCGAAATCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAGgtaatatggt ... acaactgcagCGAAAGACCGATGACTCAGGTAGAAGAAAAACCGGTTCACCG
EST: TCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAG CGAAAGACCGATGACTCAGGTAGAAGAAAAACCGGTTCACCGCCAGAGATTEST: gi|164209065|gb|ES044728.1|ES044728
genomic: TCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAGgtaatatggt ... acaactgcagCGAAAGACCGATGACTCAGGTAGAAGAAAAACCGGTTCACCGCCAGAGATT
EST: ACTATCCCTCCGAAATCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAG CGAAAGACCGATGACTCAGGTAGAAGAAAAACCGGEST: gi|124948360|gb|EL024116.1|EL024116
genomic: ACTATCCCTCCGAAATCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAGgtaatatggt ... acaactgcagCGAAAGACCGATGACTCAGGTAGAAGAAAAACCGG
EST: ACTATCCCTCCGAAATCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAG CGAAAGACCGATGACTCAGGTAGAAGAAAAACCGGTTCACCGEST: gi|124790215|gb|EH879894.1|EH879894
genomic: ACTATCCCTCCGAAATCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAGgtaatatggt ... acaactgcagCGAAAGACCGATGACTCAGGTAGAAGAAAAACCGGTTCACCG
EST: ACTATCCCNCCGAAATCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAG CGAAAGACCGATGACTCAGGTAGAAGAAAAACCGGTTCACCGEST: gi|125205670|gb|EL220624.1|EL220624
genomic: ACTATCCCTCCGAAATCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAGgtaatatggt ... acaactgcagCGAAAGACCGATGACTCAGGTAGAAGAAAAACCGGTTCACCG
EST: ACTATCCCTCCGAAATCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAG CGAAAGACCGA
genomic: ACTATCCCTCCGAAATCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAGgtaatatggt ... acaactgcagCGAAAGACCGA
tgtttgaaaataacaatctttttctgattgttttgtttatgtgacacaactgcagCGAAAGACCGATGACTCAGGTAGAAGAAAAACCGGTTCACCGCCAGAGATTCGGTCTCTTGAG
aaaataacaatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatggtttgtgatttcaatcatttcatagattcttgtttgaaaataacaatctttttctgattgttttgtttatgtgacacaactgcagCGAAAGACCGATGACTCAGGTAGAAGAAAAACCGGTTCACCGCCAGAGATTCGGTCTCTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA