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gtaagcataagcaataaagttgtagaaaatagctagcgtgtgagtgaattaacacacacacttggtattattaggctggtttctttaactgaatgtgtgagtcgtgttggttgttttgatagTTGGATTTGTACTTGTTATCTCAAAAATGGAAAGAGCTGGTGGGGAAAGCTAGAAGCAAGCAACTTCAACCCCATGAATACAACTCTG
species | Arabidopsis thaliana |
transcript | AT3G25860.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGCTATCAATGGTGGCCTGATTACGCCTGTTCTACAAGATGCAGATAAG TTGGATTTGTACTTGTTATCTCAAAAATGGAAAGEST: gi|86086933|gb|DR382692.1|DR382692
genomic: TTGCTATCAATGGTGGCCTGATTACGCCTGTTCTACAAGATGCAGATAAGgtaagcataa ... gttttgatagTTGGATTTGTACTTGTTATCTCAAAAATGGAAAG
EST: AAGATGCAGATAAG TTGGATTTGTACTTGTTATCTCAAAAATGGAAAGACCTGGTGGGGAAAGCTEST: gi|125108826|gb|EL161567.1|EL161567
genomic: AAGATGCAGATAAGgtaagcataa ... gttttgatagTTGGATTTGTACTTGTTATCTCAAAAATGGAAAGAGCTGGTGGGGAAAGCT
EST: AATGGTGGCCTGATTACGCCTGTTCTACAAGATGCAGATAAG TTGGATTTGTACTTGTTATCTCAAAAATGGAAAGAGCTGGTGGGGAAAGEST: gi|124775213|gb|EH865342.1|EH865342
genomic: AATGGTGGCCTGATTACGCCTGTTCTACAAGATGCAGATAAGgtaagcataa ... gttttgatagTTGGATTTGTACTTGTTATCTCAAAAATGGAAAGAGCTGGTGGGGAAAG
EST: AATGGTGGCCTGATTACGCCTGTTCTACAAGATGCAGATAAG TTGGATTTGTACTTGTTATCTCAAAAATGGAAAGAGCTGGTGGGGAAA
genomic: AATGGTGGCCTGATTACGCCTGTTCTACAAGATGCAGATAAGgtaagcataa ... gttttgatagTTGGATTTGTACTTGTTATCTCAAAAATGGAAAGAGCTGGTGGGGAAA
ttattaggctggtttctttaactgaatgtgtgagtcgtgttggttgttttgatagTTGGATTTGTACTTGTTATCTCAAAAATGGAAAGAGCTGGTGGGGAAAGCTAGAAGCAAGCAACTTCAACCCCATGAATACAACTCTG
ctttaac putative branch site (score: 3)
ttgtttt putative PPT
tttctttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcataagcaataaagttgtagaaaatagctagcgtgtgagtgaattaacacacacacttggtattattaggctggtttctttaactgaatgtgtgagtcgtgttggttgttttgatagTTGGATTTGTACTTGTTATCTCAAAAATGGAAAGAGCTGGTGGGGAAAGCTAGAAGCAAGCAACTTCAACCCCATGAATACAACTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA