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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcttaaagatctcctagtttcttggtttgatgaaagattggactaacgttttcgttttttctttccatgtgggctctttgtgatccacgtacagccccaacatggtataagtgatttctgtttcacagttaaactcgaatgttgtatagcaaaggcgataatacttagaatggtttgtgtgttttgttttgtagATAACACTTATGGGGTTCATGTTTCTTCTCACATCTGCTCTCTTAGGCTAT

Basic information

species Arabidopsis thaliana
transcript AT3G25585.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116466773|gb|EG509365.1|EG509365
EST:     TG                         ATAACACTTATGGGGTTCATGTTTCTTCTCACATCTGCTCTCTTAGGCTA
genomic: --gtatcttaaa ... tgttttgtagATAACACTTATGGGGTTCATGTTTCTTCTCACATCTGCTCTCTTAGGCTA
EST: gi|116466773|gb|EG509365.1|EG509365
EST:     TG                         ATAACACTTATGGGGTTCATGTTTCTTCTCACATCTGCTCTCTTAGGCTA
genomic: --gtatcttaaa ... tgttttgtagATAACACTTATGGGGTTCATGTTTCTTCTCACATCTGCTCTCTTAGGCTA
EST: gi|116466773|gb|EG509365.1|EG509365
EST:     TG                         ATAACACTTATGGGGTTCATGTTTCTTCTCACATCTGCTCTCTTAGGCTA
genomic: --gtatcttaaa ... tgttttgtagATAACACTTATGGGGTTCATGTTTCTTCTCACATCTGCTCTCTTAGGCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgtatagcaaaggcgataatacttagaatggtttgtgtgttttgttttgtagATAACACTTATGGGGTTCATGTTTCTTCTCACATCTGCTCTCTTAGGCTAT
                                          ttttgtttt  CT-rich tract
                  ataatacttagaat  TA-rich tract