1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctgctgatgtttagattttgtctgaaaataaatgcaatgtatatgaagatattgtttggtaggtgaaagcttacatatttgtttttattggtgtttgtagAAATTGGCAAGTCTTGTGATCTATGGAAGGATGAGTACGAATAAGAGTGACAACATAAAAGACAGGAAGAAAAATAGTCCAAAAGTTCGAAAATTTAAAG
species | Arabidopsis thaliana |
transcript | AT3G25540.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCGTCTTCGAG AAATTGGCAAGTCTTGTGATCTATGGAAGGATGAGTACGAATAAGAGTGACEST: gi|116454729|gb|EG497321.1|EG497321
genomic: TTCGTCTTCGAGgtaatttact ... gtgtttgtagAAATTGGCAAGTCTTGTGATCTATGGAAGGATGAGTACGAATAAGAGTGAC
EST: CAGTGTTCTTCCCTACAATTCGATTTCTACTTGACAGATTCGTCTTCGAG AAATTGGCAAGTCTTGTGATCTATGGAAGGATGAGTACGAATAAGAGTGAC
genomic: CAGTGTTCTTCCCTACAATTCGATTTCTACTTGACAGATTCGTCTTCGAGgtaatttact ... gtgtttgtagAAATTGGCAAGTCTTGTGATCTATGGAAGGATGAGTACGAATAAGAGTGAC
aagatattgtttggtaggtgaaagcttacatatttgtttttattggtgtttgtagAAATTGGCAAGTCTTGTGATCTATGGAAGGATGAGTACGAATAAGAGTGACAACATAAAAGACAGGAAGAAAAATAGTCCAAAAGTTCGAAAATTTAAAG
agcttac putative branch site (score: 3)
ttacatatttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgctgatgtttagattttgtctgaaaataaatgcaatgtatatgaagatattgtttggtaggtgaaagcttacatatttgtttttattggtgtttgtagAAATTGGCAAGTCTTGTGATCTATGGAAGGATGAGTACGAATAAGAGTGACAACATAAAAGACAGGAAGAAAAATAGTCCAAAAGTTCGAAAATTTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
ctgctga
- - - - - - -gattttg
- - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - gaagata
- - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaaagc