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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatatggttgattctgtctttatggcttacttatgtgtaatttttttttgttgaactagcttactgtactggccttcttttggctcgccgtgttttaaagATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG

Basic information

species Arabidopsis thaliana
transcript AT3G25520.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G25520.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GRMZM5G815894_T03 (Zea mays), 3'ss of exon 4
--------------------------aatatggttgattctgtctttatgg-cttacttatgtgtaatttttttttgttgaact--------agcttactgtactggccttcttttggctcgccgtgttttaaagATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG
                           | || |   ||| |  ||| |||   |||  |||     | ||    |  ||  |||        ||| ||||| ||||||||||| ||||||||||||||  | ||||     |   | ||| | || |||||||| || ||||||
gtaatttcccttctggaaatattgtgtaaattgcatattgtaccttaatgaatttatatattcactagttcaactgcttacactcatcttgtagCCTACTGCACTGGCCTTCTGTTGGCTCGCCGTGTGCTCAAGACCCGTGGTTTAGATAAGGAATATGAGGGCAATGTTGAG

upper sequence: AT3G25520.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GRMZM2G163081_T03 (Zea mays), 3'ss of exon 4
-------------------------aatatggttgattctgtctttatg-gcttacttatg-tgtaatttttttttgttgaactagcttactgtactggccttcttttggctcgccgtgttttaaagATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG
                          | || |   ||| | | || |||   |||  |||  | ||| |         |    |||| ||||| ||||||||||| ||||||||||||||  | |||||    |   ||||| | ||||| ||||| || ||||||
gtattttttccatggaaataatgtataaattgcatattatattttaatgtatttatatattctctaaatcaacacccatcttgtagCCTACTGCACTGGCCTTCTGTTGGCTCGCCGTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAG

upper sequence: AT3G25520.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GRMZM2G163081_T04 (Zea mays), 3'ss of exon 4
-----------------------------aatatggttgattctgtctttatg-gcttacttatg-tgtaatttttttttgttgaactagcttactgtactggccttcttttggctcgccgtgttttaaagATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG
                              | || |   ||| | | || |||   |||  |||  | ||| |         |    |||| ||||| ||||||||||| ||||||||||||||  | |||||    |   ||||| | ||||| ||||| || ||||||
gctggtattttttccatggaaataatgtataaattgcatattatattttaatgtatttatatattctctaaatcaacacccatcttgtagCCTACTGCACTGGCCTTCTGTTGGCTCGCCGTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAG

upper sequence: AT3G25520.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv05s0094g00870.t01 (Vitis vinifera), 3'ss of exon 4
-------------------------------------------------------------------------------------aatatggttgattctgtctttatggcttacttatgtgtaatttttttttgttgaactagcttactgtactggccttcttttggctcgccgtgttttaaagATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG
                                                                                     || ||      |      ||| ||    | | |  ||  | |  ||  | ||||  |||||||||| ||||| ||||| |||||||||||||| || || ||| | || |||||||  || ||||| || || || |||
gtatatttatcagaaattggttcattgttcctatttatttaaaatttgtcatgtttatgaatttttacttgtgcctctttgtaagaacataccatgtgtaacttttttgtggcattaacatg-gactaattccttttgag-tagCTTACTGCACTGGGCTTCTCTTGGCTCGCCGTGTCTTGAAAATGCTTGAGATGGATGGTGAATATGAAGGCAATGTGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgttgaactagcttactgtactggccttcttttggctcgccgtgttttaaagATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG
            agcttac  putative branch site (score: 3)
                                             tgttttaaa  TA-rich tract