Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatagattgttgattcgttttattctgatgatattgtttgttctctctttgtttcaatctgtttctgaaaattattttatttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGAACAAGTACAATACTCCTAAGTATCGTTTTGTTGTCCGGTTTACCAACAA

Basic information

species Arabidopsis thaliana
transcript AT3G25520.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G25520.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: LOC_Os01g67134.1 (Oryza sativa), 3'ss of exon 2
gtaatagattgttgattcgttttattctgatgatattgtttgttctctctttgtttcaatctgtttctgaaaattattt-tatttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGAACAAGTACAATACTCCTAAGTATCGTTTTGTTGTCCGGTTTACCAACAA
    ||  |      |||     |  | || |   ||    ||    ||   ||||  |  |  ||   ||  | |||| |  || | || ||| || ||||||||||||||||| |||||  | || | ||||||||| |||||||||||||| || || ||||| || || |||||  | |||        
---gtaagtca--agttcaagaga--ccgaggcgtttccaagtcaagtcaaggttttgacgtactt---aatctcatttgtcattgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT--------

upper sequence: AT3G25520.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: LOC_Os01g67126.1 (Oryza sativa), 3'ss of exon 2
gtaatagatt--gttgattcgttttattctgatgatattgtttgttctctctttgtttcaatctgtttctgaaaattattttattt----ttg--tgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGAACAAGTACAATACTCCTAAGTATCGTTTTGTTGTCCGGTTTACCAACAA
    ||  ||   |  | || ||| ||   | | ||    | ||| ||     | |  | |  | ||  || |  | || | ||||    |||  || ||| || ||||||||||||||||| |||||  | || | ||||||||| |||||||||||||| || || ||||| || || |||                 
---gtaagttcaatataatcctttcatgtggctcatgcattctgtgcttgtaatatagctaggttttgatgtacttaatctcatttgttattgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTT-----------------

upper sequence: AT3G25520.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GRMZM2G090738_T01 (Zea mays), 3'ss of exon 2
gtaatagattgttgattcgttttattctgatgatattgtttgttctctctttgtttcaatctgtttctgaaaat-------tattttatttttgt--gtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGAACAAGTACAATACTCCTAAGTATCGTTTTGTTGTCCGGTTTACCAACAA
    ||  ||    ||||  |||  |||  ||||  | |||||| | | |    ||   | ||| | ||| | |       | | || || ||||  | || ||| ||||| |||||||||||||||||  |  | || |||||||||||||||||||||||||| || || || || ||| |||| || |||        
---gtatgttcaacattctgttttctctcttgatgat-tttgttatttttgctatttgctgtgtgtttgatagtctacatttctcttgttcttgtttgcagCTGGTAAGACAGACTACAGGGCAAGGATAAGGTTGATTAACCAAGACAAGAACAAGTACAATACACCCAAATACCGATTTATTGTGCGATTT--------

upper sequence: AT3G25520.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GRMZM5G815894_T03 (Zea mays), 3'ss of exon 2
gtaatagattgttgattcgttttattctgatgatattgtttgttctctctttgtttcaatctgtttctgaaaattattttatttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGAACAAGTACAATACTCCTAAGTATCGTTTTGTTGTCCGGTTTACCAACAA
||| |   ||||    || ||| ||  |     || | |   || | | |    ||  ||      |       ||||    || | || || ||| ||||| ||||||||||| |||||  | || || ||||||||||| |||||||||||||| || || ||  | |||||||| || |||        
gta-tgttttgtctgctcttttgatgtttgcattactatcatttttatttcctgtttgattgaaagcctttttctattgaccttgtttgcagCTGGCAAGACAGACTACAGGGCCAGGATAAGGCTGATTAACCAAGACAAAAACAAGTACAATACACCCAAATACAGATTTGTTGTGCGATTT--------

upper sequence: AT3G25520.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv05s0094g00870.t01 (Vitis vinifera), 3'ss of exon 2
gtaatagattgttgattcgttttattctgatgatattgtttgttctctctttgtttcaatctgtttctgaaaattatttt---atttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGAACAAGTACAATACTCCTAAGTATCGTTTTGTTGTCCGGTTTACCAACAA
||| |  | |     | |  | | |  |  | ||| | ||||   | || ||  |||   || ||| || |  | ||||    | || | |  ||| |||||||||||||||||||| ||||| || || || || ||||||||||||||||| || ||||| || ||||| |||||||| || |||        
gtattgtactacatttccaatgt-tcattcttatagtttttgggttttcgtttgttcg--ctttttatggatttaatttctaaaattgtctacagAGGGAAAGACTGACTACAGGGCTAGGATTCGCCTGATTAATCAAGACAAGAACAAGTATAACACTCCGAAATATCGCTTTGTTGTGCGATTT--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86038124|gb|DR333879.1|DR333879
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038155|gb|DR333910.1|DR333910
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|125279474|gb|EL293559.1|EL293559
EST:     TACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: TACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038142|gb|DR333897.1|DR333897
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038115|gb|DR333870.1|DR333870
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|125278612|gb|EL292697.1|EL292697
EST:     CTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: CTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038157|gb|DR333912.1|DR333912
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038128|gb|DR333883.1|DR333883
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038118|gb|DR333873.1|DR333873
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTTAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|164074725|gb|ES187761.1|ES187761
EST:     GAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038119|gb|DR333874.1|DR333874
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038121|gb|DR333876.1|DR333876
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038137|gb|DR333892.1|DR333892
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|124832459|gb|EH916898.1|EH916898
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACT
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACT
EST: gi|86038143|gb|DR333898.1|DR333898
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038126|gb|DR333881.1|DR333881
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038125|gb|DR333880.1|DR333880
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038109|gb|DR333864.1|DR333864
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|125227397|gb|EL241482.1|EL241482
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGT
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGT
EST: gi|86038134|gb|DR333889.1|DR333889
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038133|gb|DR333888.1|DR333888
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038146|gb|DR333901.1|DR333901
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038149|gb|DR333904.1|DR333904
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038116|gb|DR333871.1|DR333871
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTANNNGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038145|gb|DR333900.1|DR333900
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038140|gb|DR333895.1|DR333895
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038150|gb|DR333905.1|DR333905
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038156|gb|DR333911.1|DR333911
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTTAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|164107083|gb|ES204335.1|ES204335
EST:     CTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: CTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|164198070|gb|ES093109.1|ES093109
EST:     AGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: AGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038144|gb|DR333899.1|DR333899
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAASCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038130|gb|DR333885.1|DR333885
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038129|gb|DR333884.1|DR333884
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038120|gb|DR333875.1|DR333875
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|124770140|gb|EH860270.1|EH860270
EST:     CTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: CTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038123|gb|DR333878.1|DR333878
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038141|gb|DR333896.1|DR333896
EST:     TCGAATGCTTACTTCAAGAGGTACACAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGNTACCGTCTTATCAACNAAGACAAG
genomic: TCGAATGCTTACTTCAAGAGGTAC-CAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGAT-CCGTCTTATCAACCAAGACAAG
EST: gi|86038132|gb|DR333887.1|DR333887
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|164226307|gb|ES119627.1|ES119627
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|152035554|gb|BP857684.2|BP857684
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038114|gb|DR333869.1|DR333869
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038131|gb|DR333886.1|DR333886
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|125250559|gb|EL264644.1|EL264644
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAA
EST: gi|86038148|gb|DR333903.1|DR333903
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038111|gb|DR333866.1|DR333866
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038138|gb|DR333893.1|DR333893
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038110|gb|DR333865.1|DR333865
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038154|gb|DR333909.1|DR333909
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038152|gb|DR333907.1|DR333907
EST:     GTCGAATGCTTACTTCAAGAGGTACCARGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038122|gb|DR333877.1|DR333877
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|164196536|gb|ES005288.1|ES005288
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGA
EST: gi|164185976|gb|ES108348.1|ES108348
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCA
EST: gi|86038117|gb|DR333872.1|DR333872
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038135|gb|DR333890.1|DR333890
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038147|gb|DR333902.1|DR333902
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038139|gb|DR333894.1|DR333894
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|86038127|gb|DR333882.1|DR333882
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGA
EST: gi|125033558|gb|EL105827.1|EL105827
EST:     GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAG                         ATGGAAAGACTGACTACAGGGCAAGGATCCGTCTT
genomic: GTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagatt ... ttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgttctctctttgtttcaatctgtttctgaaaattattttatttttgtgtagATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAGAACAAGTACAATACTCCTAAGTATCGTTTTGTTGTCCGGTTTACCAACAA
                                       ttttattttt  CT-rich tract
                    aatctgtttctgaaaa  TA-rich tract