1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtttgtgattctcatctcctaaagacctaatagtttccgtatagttagtaatctggagaattcggtagactaatttgatagatatgaacttgaattgagatatagttgttgttaagttcaaaatcgaatttttgttgatgaatgtgtaatggtttgtggttgttggcattgtgtttttgcagGTCAAGTTATTAAAGGATGGGATATTGGTATTAAGACGATGAAGAAAGGTGAAAACGCTGTTTTCACTATACCTGCGGAGCTAGCATATGGGGAATCTGG
species | Arabidopsis thaliana |
transcript | AT3G25230.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGATTCGAGTCGTGATAGAGCAACGCCTTTCAAATTCACTCTTGGACAAG GTCAAGTTATTAAAGGATGGGATATTGGTATTAAGACGATGAAGAAAGGEST: gi|301501375|gb|HO206915.1|HO206915
genomic: TGATTCGAGTCGTGATAGAGCAACGCCTTTCAAATTCACTCTTGGACAAGgtttgtgatt ... gtttttgcagGTCAAGTTATTAAAGGATGGGATATTGGTATTAAGACGATGAAGAAAGG
EST: TGATTCGAGTCGTGATAGAGCAACGCCTTTCAAATTCACTCTTGGACAAG GTCAAGTTATTAAAGGATGGGATATTGGTATTAAGACGATGAAGAAAGGTGEST: gi|116475203|gb|EG517795.1|EG517795
genomic: TGATTCGAGTCGTGATAGAGCAACGCCTTTCAAATTCACTCTTGGACAAGgtttgtgatt ... gtttttgcagGTCAAGTTATTAAAGGATGGGATATTGGTATTAAGACGATGAAGAAAGGTG
EST: TGATTCGAGTCGTGATAGAGCAACGCCTTTCAAATTCACTCTTGGACAAG GTCAAGTTATTAAAGGATGGGATATTGGTATTAAGACGATGAAGAAAGGTGEST: gi|116434999|gb|EG477591.1|EG477591
genomic: TGATTCGAGTCGTGATAGAGCAACGCCTTTCAAATTCACTCTTGGACAAGgtttgtgatt ... gtttttgcagGTCAAGTTATTAAAGGATGGGATATTGGTATTAAGACGATGAAGAAAGGTG
EST: TGATTCGAGTCGTGATAGAGCAACGCCTTTCAAATTCACTCTTGGACAAG GTCAAGTTATTAAAGGATGGGATATTGGTATTAAGACGATGAAGAAAGGTGEST: gi|116475202|gb|EG517794.1|EG517794
genomic: TGATTCGAGTCGTGATAGAGCAACGCCTTTCAAATTCACTCTTGGACAAGgtttgtgatt ... gtttttgcagGTCAAGTTATTAAAGGATGGGATATTGGTATTAAGACGATGAAGAAAGGTG
EST: TGATTCGAGTCGTGATAGAGCAACGCCTTTCAAATTCACTCTTGGACAAG GTCAAGTTATTAAAGGATGGGATATTGGTATTAAGACGATGAAGAAAGGTGEST: gi|116435001|gb|EG477593.1|EG477593
genomic: TGATTCGAGTCGTGATAGAGCAACGCCTTTCAAATTCACTCTTGGACAAGgtttgtgatt ... gtttttgcagGTCAAGTTATTAAAGGATGGGATATTGGTATTAAGACGATGAAGAAAGGTG
EST: TGATTCGAGTCGTGATAGAGCAACGCCTTTCAAATTCACTCTTGGACAAG GTCAAGTTATTAAAGGATGGGATATTGGTATTAAGACGATGAAGAAAGGTGEST: gi|86070354|gb|DR366111.1|DR366111
genomic: TGATTCGAGTCGTGATAGAGCAACGCCTTTCAAATTCACTCTTGGACAAGgtttgtgatt ... gtttttgcagGTCAAGTTATTAAAGGATGGGATATTGGTATTAAGACGATGAAGAAAGGTG
EST: TGATTCGAGTCGTGATAGAGCAACGCCTTTCAAATTCACTCTTGGACAAG GTCAAGTTATTAAAGGATGGGATATTGGTATTAAGACGATGAAGAAAGGTG
genomic: TGATTCGAGTCGTGATAGAGCAACGCCTTTCAAATTCACTCTTGGACAAGgtttgtgatt ... gtttttgcagGTCAAGTTATTAAAGGATGGGATATTGGTATTAAGACGATGAAGAAAGGTG
atttttgttgatgaatgtgtaatggtttgtggttgttggcattgtgtttttgcagGTCAAGTTATTAAAGGATGGGATATTGGTATTAAGACGATGAAGAAAGGTGAAAACGCTGTTTTCACTATACCTGCGGAGCTAGCATATGGGGAATCTGG
tgttgat putative branch site (score: 4)
tgttttt putative PPT
tgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgattctcatctcctaaagacctaatagtttccgtatagttagtaatctggagaattcggtagactaatttgatagatatgaacttgaattgagatatagttgttgttaagttcaaaatcgaatttttgttgatgaatgtgtaatggtttgtggttgttggcattgtgtttttgcagGTCAAGTTATTAAAGGATGGGATATTGGTATTAAGACGATGAAGAAAGGTGAAAACGCTGTTTTCACTATACCTGCGGAGCTAGCATATGGGGAATCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT