Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattaattaatctcttgttctagtagctgattaaagccggtttaggttggtttatgttaattccggtttggttatattgtagAACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAG

Basic information

species Arabidopsis thaliana
transcript AT3G24730.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G24730.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv07s0005g05620.t01 (Vitis vinifera), 3'ss of exon 3
----------gtaattaattaatctct----tgttctagtagctgattaaagccggtttaggttggtttatgttaattccggtttggtta--tattgtagAACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAG
          | | || ||  || ||     |||  || |     |   || |   | | ||       ||    |||   ||||  ||   | ||  || | ||||||||| ||||||||||| ||||| ||| | | |||||| ||||| ||||||||||| |||
atactgtgttgaatttcatatatatcggaaatgtcataatgcagtaagtaatcttatatgggacttcaaattcacattgttgttttattccttgtttcagGAGTGCGGATCACACTAAATGGGTCGGTGCTTTTGACAGAAAACAGGACTTCATTGATGTTGTAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86025275|gb|DR321028.1|DR321028
EST:     CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGG                         AACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTT
genomic: CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGGgtaattaatt ... tatattgtagAACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTT
EST: gi|86025278|gb|DR321031.1|DR321031
EST:     CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGG                         AACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTT
genomic: CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGGgtaattaatt ... tatattgtagAACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTT
EST: gi|86025276|gb|DR321029.1|DR321029
EST:     CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGG                         AACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTT
genomic: CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGGgtaattaatt ... tatattgtagAACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTT
EST: gi|86076496|gb|DR372253.1|DR372253
EST:     CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGG                         AACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTT
genomic: CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGGgtaattaatt ... tatattgtagAACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTT
EST: gi|86025279|gb|DR321032.1|DR321032
EST:     CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGG                         AACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTT
genomic: CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGGgtaattaatt ... tatattgtagAACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTT
EST: gi|86025282|gb|DR321035.1|DR321035
EST:     CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGG                         AACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTT
genomic: CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGGgtaattaatt ... tatattgtagAACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTT
EST: gi|86025281|gb|DR321034.1|DR321034
EST:     CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGG                         AACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTT
genomic: CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGGgtaattaatt ... tatattgtagAACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTT
EST: gi|86025274|gb|DR321027.1|DR321027
EST:     CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGG                         AACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTT
genomic: CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGGgtaattaatt ... tatattgtagAACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattaaagccggtttaggttggtttatgttaattccggtttggttatattgtagAACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAG
                           tgttaat  putative branch site (score: 3)
                       tttatgttaatt  TA-rich tract