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gtaataataatactttatccttcaccaatttgttctgttttagattgtttgttcaaggctgctgaaacatgtttggtctcttgttgtagGTTTCGTTCCGTTTGGAGCTGACAACACCCGCATGTCCAGTCAAAGACATG
species | Arabidopsis thaliana |
transcript | AT3G24430.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTCTTGTGGTTTTGTGAAAGATTTGGGGATTAATGAAGCTTTGGGTGAG GTTTCGTTCCGTTTGGAGCTGACAACACCCGCATGTCCAGTCAAAGACATGEST: gi|86052777|gb|DR348534.1|DR348534
genomic: TTTCTTGTGGTTTTGTGAAAGATTTGGGGATTAATGAAGCTTTGGGTGAGgtaataataa ... cttgttgtagGTTTCGTTCCGTTTGGAGCTGACAACACCCGCATGTCCAGTCAAAGACATG
EST: TTTCTTGTGGTTTTGTGAAAGATTTGGGGATTAATGAAGCTTTGGGTGAG GTTTCGTTCCGTTTGGAGCTGACAACACCCGCATGTCCAGTCAAAGACATGEST: gi|86052776|gb|DR348533.1|DR348533
genomic: TTTCTTGTGGTTTTGTGAAAGATTTGGGGATTAATGAAGCTTTGGGTGAGgtaataataa ... cttgttgtagGTTTCGTTCCGTTTGGAGCTGACAACACCCGCATGTCCAGTCAAAGACATG
EST: TTTCTTGTGGTTTTGTGAAAGATTTGGGGATTAATGAAGCTTTGGGTGAG GTTTCGTTCCGTTTGGAGCTGACAACACCCGCATGTCCAGTCAAAGACATGEST: gi|124833638|gb|EH918077.1|EH918077
genomic: TTTCTTGTGGTTTTGTGAAAGATTTGGGGATTAATGAAGCTTTGGGTGAGgtaataataa ... cttgttgtagGTTTCGTTCCGTTTGGAGCTGACAACACCCGCATGTCCAGTCAAAGACATG
EST: TTTCTTGTGGTTTTGTGAAAGATTTGGGGATTAATGAAGCTTTGGGTGAG GTTTCGTTCCGTTTGGAGCTGACAACACCCGCATGTCCAGTC
genomic: TTTCTTGTGGTTTTGTGAAAGATTTGGGGATTAATGAAGCTTTGGGTGAGgtaataataa ... cttgttgtagGTTTCGTTCCGTTTGGAGCTGACAACACCCGCATGTCCAGTC
ctgttttagattgtttgttcaaggctgctgaaacatgtttggtctcttgttgtagGTTTCGTTCCGTTTGGAGCTGACAACACCCGCATGTCCAGTCAAAGACATG
tctcttgtt CT-rich tract
ttagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataataatactttatccttcaccaatttgttctgttttagattgtttgttcaaggctgctgaaacatgtttggtctcttgttgtagGTTTCGTTCCGTTTGGAGCTGACAACACCCGCATGTCCAGTCAAAGACATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA