1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gaggttttttgggtttccctttcttgcatcaaaggagttttctttatcaaattcacactggatagaaatttttataaccatggtcttagtttatctgcagGCGGTGATGTGAAGCAGATTACATCCAAAAATCAATTGTCAGATATGATAGAG
species | Arabidopsis thaliana |
transcript | AT3G24360.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGTCAAATGTGTTGTCGTCGAAGGAAGCACATCTCGGGCCTTTTGTGCAG GCGGTGATGTGAAGCAGATTACATCCAAAAATCAATTGTCAGATATGATAG
genomic: AGTCAAATGTGTTGTCGTCGAAGGAAGCACATCTCGGGCCTTTTGTGCAGgtaaaagaaa ... ttatctgcagGCGGTGATGTGAAGCAGATTACATCCAAAAATCAATTGTCAGATATGATAG
atcaaattcacactggatagaaatttttataaccatggtcttagtttatctgcagGCGGTGATGTGAAGCAGATTACATCCAAAAATCAATTGTCAGATATGATAGAG
ttataac putative branch site (score: 2)
tttatct putative PPT
atagaaatttttataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaggttttttgggtttccctttcttgcatcaaaggagttttctttatcaaattcacactggatagaaatttttataaccatggtcttagtttatctgcagGCGGTGATGTGAAGCAGATTACATCCAAAAATCAATTGTCAGATATGATAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - -tttttgg
- - - - - - - - -cctttct
- - - - - - - - - - - - - catcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - attcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataacca