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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttacttttatcaaattgatgagaagatagtttcttaaaccctaaacccttgtgcctagttggatagcctattcaccttgctttgatattattgcagCCTGGCCATTTTCAAGACAAGACATATGACATTGTATCTGCTTTCCAG

Basic information

species Arabidopsis thaliana
transcript AT3G23940.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124813205|gb|EH898071.1|EH898071
EST:     TGGGAAGGCTTAACAGACCAGGGATTATGGTTTATGGTGGAACCATTAAG                         CCTGGCCATTTTCGAGACAAGACATATGACATTGT
genomic: TGGGAAGGCTTAACAGACCAGGGATTATGGTTTATGGTGGAACCATTAAGgtacttactt ... attattgcagCCTGGCCATTTTCAAGACAAGACATATGACATTGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaacccttgtgcctagttggatagcctattcaccttgctttgatattattgcagCCTGGCCATTTTCAAGACAAGACATATGACATTGTATCTGCTTTCCAG
                                       tttgatattatt  TA-rich tract