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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataatcaatctctcttctcctctgagtccttcttagtgtactcttcaaagttgttaataggaatgtgtttggttgcagTCAAAAAGATGTGTCTGCTTCTAAAGAAGTTGGAGAAGAAGAAGCTTTAGTCGGTAGCGAACCGGAACAAAGCTACAAGAATGACTGCAATACTCCTAGA

Basic information

species Arabidopsis thaliana
transcript AT3G22760.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86063371|gb|DR359128.1|DR359128
EST:     GTTTTCACTTCTCCTCACGCGGTTTCTCATAAAGAGTCTCGTTTCAGAAG                         TCAAAAAGATGTGTCTGCTTCTAAAGAAGTTGGAGAAGAAGAAGCTTTAGT
genomic: GTTTTCACTTCTCCTCACGCGGTTTCTCATAAAGAGTCTCGTTTCAGAAGgtataatcaa ... ttggttgcagTCAAAAAGATGTGTCTGCTTCTAAAGAAGTTGGAGAAGAAGAAGCTTTAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagtccttcttagtgtactcttcaaagttgttaataggaatgtgtttggttgcagTCAAAAAGATGTGTCTGCTTCTAAAGAAGTTGGAGAAGAAGAAGCTTTAGTCGGTAGCGAACCGGAACAAAGCTACAAGAATGACTGCAATACTCCTAGA
                            tgttaat  putative branch site (score: 3)
                           ttgttaata  TA-rich tract