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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgttatctcttgtgtgtagtcttttctttcgaaatactttctctttcatttgattatgatgtgactttgcagGTGTAGTTCGAGTTTTCTTTGGGTCAGATTTTGTCACTGTAACTAAGTCAGATGATGTATCATGGGATATTCTCAAGCCTGAGATATTTGCAGCAGTCAT

Basic information

species Arabidopsis thaliana
transcript AT3G20970.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G20970.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv13s0106g00620.t01 (Vitis vinifera), 3'ss of exon 2
------------------------gtattgttatctct-tgtgtgtagtcttttctttcgaaatactttctctttcatttgattatgatgtgactttgcagGTGTAGTTCGAGTTTTCTTTGGGTCAGATTTTGTCACTGTAACTAAGTCAGATGATGTATCATGGGATATTCTCAAGCCTGAGATATTTGCAGCAGTCAT
                        |     || | ||  | | |||  |  ||  | |    |    |    ||  |     |  |  | || |||| ||||  |   |||||||||||| || ||||||||| | |||||||| |||||||||||||  || |||||| || | || ||||| || ||||| ||| ||||
cagatgcaactaagttctcttcaagctcaattttttcaatatttgttttgattgttgttagcaagactaacattgtaggctctcctcttctgtcttt-cagGAATTACTCGAGTTTTCTTCGGATCAGATTTTATAACTGTAACAAAGTCAGATGATGCTTCTTGGGATTTTATAAAACCTGAAATTTTTGCTGCAATCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtcttttctttcgaaatactttctctttcatttgattatgatgtgactttgcagGTGTAGTTCGAGTTTTCTTTGGGTCAGATTTTGTCACTGTAACTAAGTCAGATGATGTATCATGGGATATTCTCAAGCCTGAGATATTTGCAGCAGTCAT
                              atttgat  putative branch site (score: 5)
                          tttcatttgattat  TA-rich tract