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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatatacaatgatgattacaatgccgtatctatactgatttttgaacatagagtcgagagattggttttgaactgttaatcaatttgcagGTGTTGATGGAGGCTTTGATAACAATGAGCCAGAGTACGAGGAGTCTTATAGCATAGTCATACTTCCGGATTTTGTTTCACTCCCGTTTCCTTCTGTTGA

Basic information

species Arabidopsis thaliana
transcript AT3G20630.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G20630.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA12G22240.1 (Glycine max), 3'ss of exon 2
-gtatatatacaatgatgatt----acaatgcc-gtatctatactgatttttgaacatagagtcgagagat-tggttttgaactgttaatcaatttgcagGTGTTGATGGAGGCTTTGATAACAATGAGCCAGAGTACGAGGAGTCTTATAGCATAGTCATACTTCCGGATTTTGTTTCACTCCCGTTTCCTTCTGTTGA
 ||  |     ||| || |||     ||||    |  | | |    ||              ||| |  |  |  ||||       | || |||||  |||||||||||| || |||||||||||||||||||| || |||||  || ||||  |||| ||| | || || | |||||| || || || |||||||| ||
tgtgaaggctaaattattattctttccaatatttgagtttttgacaatcagctgttcctttttcgggtaacataattttatctctcttattaatttctagGTGTTGATGGGGGATTTGATAACAATGAGCCAGAATATGAGGAAACTCATAGTGTAGTTATATTACCTGAGTATGTTTCTCTTCCATTCCCTTCTGTGGA

upper sequence: AT3G20630.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA06G39770.1 (Glycine max), 3'ss of exon 2
-gtatatatacaatgatgatt----acaa--tgccgtatctatactgatttttgaacatagagtcgagagattggttttgaactgttaatcaatttgcagGTGTTGATGGAGGCTTTGATAACAATGAGCCAGAGTACGAGGAGTCTTATAGCATAGTCATACTTCCGGATTTTGTTTCACTCCCGTTTCCTTCTGTTGA
  |  ||| |  || ||  ||    | ||  ||   | | | |||       ||  | |    | |  |   |  ||||       | || |||||  |||||||||||| || ||||||||||||||||| || || |||||  |  ||||  |||| ||| | || || | |||||| || || || |||||||| ||
aatcaataaatcattattcttttcaataatttgagttttttttacaatcaactgttccttttatgggtaacataattttatctatcttattaatttctagGTGTTGATGGGGGATTTGATAACAATGAGCCTGAATATGAGGAAACACATAGTGTAGTTATATTACCTGAGTATGTTTCTCTTCCATTCCCTTCTGTGGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86073861|gb|DR369618.1|DR369618
EST:     GTCTATTCCCGAGGATCGGCCTCTCAAGAAACCGACTCTGCTCGCTATAG                         GTGTTGATGGAGGCTTTGATAACAATGAGCCAGAGTACGAGGAGTCTTATA
genomic: GTCTATTCCCGAGGATCGGCCTCTCAAGAAACCGACTCTGCTCGCTATAGgtatatatac ... caatttgcagGTGTTGATGGAGGCTTTGATAACAATGAGCCAGAGTACGAGGAGTCTTATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatttttgaacatagagtcgagagattggttttgaactgttaatcaatttgcagGTGTTGATGGAGGCTTTGATAACAATGAGCCAGAGTACGAGGAGTCTTATAGCATAGTCATACTTCCGGATTTTGTTTCACTCCCGTTTCCTTCTGTTGA
                                        ttaatcaattt  TA-rich tract