Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116455078|gb|EG497670.1|EG497670EST: AGCTGCCATGGCTACCTATGACAAGCCCATTCACATGTAGAAGCCCTCAG G
genomic: AGCTGCCATGGCTACCTATGACAAGCCCATTCACATGTAGAAGCCCTCAGgtacatcatg ... atactaggag-
EST:
gi|116455078|gb|EG497670.1|EG497670EST: AGCTGCCATGGCTACCTATGACAAGCCCATTCACATGTAGAAGCCCTCAG G
genomic: AGCTGCCATGGCTACCTATGACAAGCCCATTCACATGTAGAAGCCCTCAGgtacatcatg ... atactaggag-
EST:
gi|116455080|gb|EG497672.1|EG497672EST: AGCTGCCATGGCTACCTATGACAAGCCCATTCACATGTAGAAGCCCTCAG G
genomic: AGCTGCCATGGCTACCTATGACAAGCCCATTCACATGTAGAAGCCCTCAGgtacatcatg ... atactaggag-
EST:
gi|116455080|gb|EG497672.1|EG497672EST: AGCTGCCATGGCTACCTATGACAAGCCCATTCACATGTAGAAGCCCTCAG G
genomic: AGCTGCCATGGCTACCTATGACAAGCCCATTCACATGTAGAAGCCCTCAGgtacatcatg ... atactaggag-
EST:
gi|86087275|gb|DR383034.1|DR383034EST: CCATGGCTACCTATGACAAGCCCATTCACATGTAGAAGCCCTCAGGAG
genomic: CCATGGCTACCTATGACAAGCCCATTCACATGTAGAAGCCCTC---AGgtacatcatg ... atactagg
EST:
gi|116463090|gb|EG505682.1|EG505682EST: AGCTGCCATGGCTACCTATGACAAGCCCATTCACATGTAGAAGCCCTCAG G
genomic: AGCTGCCATGGCTACCTATGACAAGCCCATTCACATGTAGAAGCCCTCAGgtacatcatg ... atactaggag-
EST:
gi|116463090|gb|EG505682.1|EG505682EST: AGCTGCCATGGCTACCTATGACAAGCCCATTCACATGTAGAAGCCCTCAG G
genomic: AGCTGCCATGGCTACCTATGACAAGCCCATTCACATGTAGAAGCCCTCAGgtacatcatg ... atactaggag-
EST:
gi|19740800|gb|AU226153.1|AU226153EST: AGCTGCCATGGCTACCTATGACAAGCCCATTCACATGTAGAAGCCCTCAG ATGTGGATTGAGAGGGAGAAGGAAGTAAAGCCGCCTACGACAAGCCAAATC
genomic: AGCTGCCATGGCTACCTATGACAAGCCCATTCACATGTAGAAGCCCTCAGgtacatcatg ... atactaggagATGTGGATTGAGAGGGAGAAGGAAGTAAAGCCGCCTACGACAAGCCAAATC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttggttcttcgggttttgatttttcttttgtgtgtgttgatgcgtatactaggagATGTGGATTGAGAGGGAGAAGGAAGTAAAGCCGCCTACGACAAGCCAAATCAAGATGACTTTGGTTTAAACTTTTGATTTTTAATTTCTGGTGGATATGA
tgttgat putative branch site (score: 4)
ttttgatttttctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacatcatggtttggtgttgattctgtttcggtggatgactttcttggttcttcgggttttgatttttcttttgtgtgtgttgatgcgtatactaggagATGTGGATTGAGAGGGAGAAGGAAGTAAAGCCGCCTACGACAAGCCAAATCAAGATGACTTTGGTTTAAACTTTTGATTTTTAATTTCTGGTGGATATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA