Sequence
atgc intronic sequence ATGC exonic sequencegtaaatatcaactcatgttctctgtttaaagttgcaagctttgtctttggtgtgaaatggttgtagaagatcgagctagttcaggaattactcattacctttcactatcttatggtttttggttttcctttgggaaacagGTTTCAGCTGCTGGATATGATCGTCAGGGTGTGGCAGATCATGCTAATAATCTGGCTACCAAAATACGAAACAATCTGACCAATTCAATGAAGGCAATTG
Basic information
species | Arabidopsis thaliana |
transcript | AT3G16950.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G16950.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: LOC_Os01g23610.1 (Oryza sativa), 3'ss of exon 2
gtaaatatcaactcatgttctctgtttaaagttgcaagctttgtctttggtgtgaaatggttgtagaagatcgagctagttcaggaattactcattacctttcactatcttatggtttttggttttcctttgggaaacagGTTTCAGCTGCTGGATATGATCGTCAGGGTGTGGCAGATCATGCTAATAATCTGGCTACCAAAATACGAAACAATCTGACCAATTCAATGAAGGCAATTG
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-----------------------------aatatcaaaccaagaacctccttt----tgttcatggacctttaactataagcatg--ttttttatggcccctaactttgctaa-----tcatttatcatatttgtaacagGTTTCAACAGCTGGATATGATAGGCAGGCTGTTGCAGATCATGCAAATAATCTGGCCTCTAAAATTCGTAGCAACTTGACTAATTCGATGAAAGCTTTGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|47831000|gb|CK120684.1|CK120684EST: GAATGCGGGAACTTCAGAACGAACATCACATGAAGTCCTTTGGTCTCCAG GTTTCAGCTGCTGGATATGATCGTCAGGGTGTGGCAGATCATGCTAATAAT
genomic: GAATGCGGGAACTTCAGAACGAACATCACATGAAGTCCTTTGGTCTCCAGgtaaatatca ... tgggaaacagGTTTCAGCTGCTGGATATGATCGTCAGGGTGTGGCAGATCATGCTAATAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aattactcattacctttcactatcttatggtttttggttttcctttgggaaacagGTTTCAGCTGCTGGATATGATCGTCAGGGTGTGGCAGATCATGCTAATAATCTGGCTACCAAAATACGAAACAATCTGACCAATTCAATGAAGGCAATTG
tttttggttttccttt CT-rich tract
tatcttat TA-rich tract