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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataaaaattatcaatttgtaaaaccaaattaatttcttgatggccatgttaagatgatcaagttttttcgatgctaagaataccctttttcctatccggggaagagacctaaccctgactaaaccgttgggtgcatgctcgcagTGTGGTGGAGAGGAGAATGTAGATGACCTTGTGAGGCAGCCCTTCTATAGGTTCCTTCAGCGAACGGTCCTATTGCATATGATGGCTTATTCCTTCCTCT

Basic information

species Arabidopsis thaliana
transcript AT3G15870.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86077500|gb|DR373257.1|DR373257
EST:     GGTTTAGTCACATGGCATGGATATTTGATACAAGTTCTATCCTTGAGAAT                         TGTGGTGGAGAGGAGAATGTAGATGACCTTGTGAGGCAGCCCTTCTATAGG
genomic: GGTTTAGTCACATGGCATGGATATTTGATACAAGTTCTATCCTTGAGAATgtaataaaaa ... atgctcgcagTGTGGTGGAGAGGAGAATGTAGATGACCTTGTGAGGCAGCCCTTCTATAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctatccggggaagagacctaaccctgactaaaccgttgggtgcatgctcgcagTGTGGTGGAGAGGAGAATGTAGATGACCTTGTGAGGCAGCCCTTCTATAGGTTCCTTCAGCGAACGGTCCTATTGCATATGATGGCTTATTCCTTCCTCT
                           gactaaa  putative branch site (score: 2)