1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacactccagcttctctagatttgaagttgaatgtttctttgttaggtgtttgctaatgctgttttagctttggtggttgtgtagGATGTGAAGGATAATCCTGTTATGATCTACATGAAAGGTGTCCCTGAATCTCCTCAGTGTGGGTTTAGCTCACTAGCCGTCAGAGTTTTGCAGCAATATA
species | Arabidopsis thaliana |
transcript | AT3G15660.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAAAAGTCCCTCCCGATTCTACGGACTCACTTAAAGATATCGTTGAGAAT GATGTGAAGGATAATCCTGTTATGATCTACATGAAAGGTGTCCCTGAATCTEST: gi|19874734|gb|AU235565.1|AU235565
genomic: AAAAAGTCCCTCCCGATTCTACGGACTCACTTAAAGATATCGTTGAGAATgtacactcca ... ggttgtgtagGATGTGAAGGATAATCCTGTTATGATCTACATGAAAGGTGTCCCTGAATCT
EST: AAAAAGTCCCTCCCGATTCTACGGACTCACTTAAAGATATCGTTGAGAAT GATGTGAAGGATAATCCTGTTATGATCTACATGAAAGGTGTCCCTGAATCTEST: gi|86079164|gb|DR374921.1|DR374921
genomic: AAAAAGTCCCTCCCGATTCTACGGACTCACTTAAAGATATCGTTGAGAATgtacactcca ... ggttgtgtagGATGTGAAGGATAATCCTGTTATGATCTACATGAAAGGTGTCCCTGAATCT
EST: AAAAAGTCCCTCCCGATTCTACGGACTCACTTAAAGATATCGTTGAGAAT GATGTGAAGGATAATCCTGTTATGATCTACATGAAAGGTGTCCCTGAATCTEST: gi|86081518|gb|DR377275.1|DR377275
genomic: AAAAAGTCCCTCCCGATTCTACGGACTCACTTAAAGATATCGTTGAGAATgtacactcca ... ggttgtgtagGATGTGAAGGATAATCCTGTTATGATCTACATGAAAGGTGTCCCTGAATCT
EST: AAAAAGTCCCTCCCGATTCTACGGACTCACTTAAAGATATCGTTGAGAAT GATGTGAAGGATAATCCTGTTATGATCTACATGAAAGGTGTCCCTGAATCT
genomic: AAAAAGTCCCTCCCGATTCTACGGACTCACTTAAAGATATCGTTGAGAATgtacactcca ... ggttgtgtagGATGTGAAGGATAATCCTGTTATGATCTACATGAAAGGTGTCCCTGAATCT
aatgtttctttgttaggtgtttgctaatgctgttttagctttggtggttgtgtagGATGTGAAGGATAATCCTGTTATGATCTACATGAAAGGTGTCCCTGAATCTCCTCAGTGTGGGTTTAGCTCACTAGCCGTCAGAGTTTTGCAGCAATATA
tgctaat putative branch site (score: 2)
tttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacactccagcttctctagatttgaagttgaatgtttctttgttaggtgtttgctaatgctgttttagctttggtggttgtgtagGATGTGAAGGATAATCCTGTTATGATCTACATGAAAGGTGTCCCTGAATCTCCTCAGTGTGGGTTTAGCTCACTAGCCGTCAGAGTTTTGCAGCAATATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA