1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttcagcatgtctgtagagtattaaactgcaaagtcaatgtattcttgatttcttcccagaaactgaagttagtacgtgtttgtttgtgttcgtcttcagTGTAGGAAGCACAAAGATCTTTACATGTGGATGGTGAAGTCCCCTGGTGGACCTTCCGTTAAGTTCTTGGTTAATGCTG
species | Arabidopsis thaliana |
transcript | AT3G15460.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTAATGAGCTCATCGAGCTTAAGGGCTCTTCTTCCTGTTTGTTTTTCGAG TGTAGGA-GCACAAAGATCTTTACATGTGGATGGTGAAGTCCC-TGGTGGAEST: gi|86031712|gb|DR327465.1|DR327465
genomic: TTAATGAGCTCATCGAGCTTAAGGGCTCTTCTTCCTGTTTGTTTTTCGAGgtaaagtttc ... tcgtcttcagTGTAGGAAGCACAAAGATCTTTACATGTGGATGGTGAAGTCCCCTGGTGGA
EST: TTAATGAGCTCATCGAGCTTAAGGGCTCTTCTTCCTGTTTGTTTTTCGAG TGTAGGAAGCACAAAGATCTTTACATGTGGATGGTGAAGTCCCCTGGTGGAEST: gi|86031710|gb|DR327463.1|DR327463
genomic: TTAATGAGCTCATCGAGCTTAAGGGCTCTTCTTCCTGTTTGTTTTTCGAGgtaaagtttc ... tcgtcttcagTGTAGGAAGCACAAAGATCTTTACATGTGGATGGTGAAGTCCCCTGGTGGA
EST: TTAATGAGCTCATCGAGCTTAAGGGCTCTTCTTCCTGTTTGTTTTTCGAG TGTAGGAAGCACAAAGATCTTTACATGTGGATGGTGAAGTCCEST: gi|86031714|gb|DR327467.1|DR327467
genomic: TTAATGAGCTCATCGAGCTTAAGGGCTCTTCTTCCTGTTTGTTTTTCGAGgtaaagtttc ... tcgtcttcagTGTAGGAAGCACAAAGATCTTTACATGTGGATGGTGAAGTCC
EST: TTAATGAGCTCATCGAGCTTAAGGGCTCTTCTTCCTGTTTGTTTTTCGAG TGTAGGAAGCACAAAGATCTTTACATGTGGATGGTGAAGTCCCCTGGTGGAEST: gi|86031711|gb|DR327464.1|DR327464
genomic: TTAATGAGCTCATCGAGCTTAAGGGCTCTTCTTCCTGTTTGTTTTTCGAGgtaaagtttc ... tcgtcttcagTGTAGGAAGCACAAAGATCTTTACATGTGGATGGTGAAGTCCCCTGGTGGA
EST: TTAATGAGCTCATCGAGCTTAAGGGCTCTTCTTCCTGTTTGTTTTTCGAG TGTAGGAAGCACAAAGATCTTTACATGTGGATGGTGAAGTCCCCTGGTGGAEST: gi|86031708|gb|DR327461.1|DR327461
genomic: TTAATGAGCTCATCGAGCTTAAGGGCTCTTCTTCCTGTTTGTTTTTCGAGgtaaagtttc ... tcgtcttcagTGTAGGAAGCACAAAGATCTTTACATGTGGATGGTGAAGTCCCCTGGTGGA
EST: TTAATGAGCTCATCGAGCTTAAGGGCTCTTCTTCCTGTTTGTTTTTCGAG TGTAGGAAGCACAAAGATCTTTACATGTGGATGGTGAAGTCCCCTGGTGGA
genomic: TTAATGAGCTCATCGAGCTTAAGGGCTCTTCTTCCTGTTTGTTTTTCGAGgtaaagtttc ... tcgtcttcagTGTAGGAAGCACAAAGATCTTTACATGTGGATGGTGAAGTCCCCTGGTGGA
ttgatttcttcccagaaactgaagttagtacgtgtttgtttgtgttcgtcttcagTGTAGGAAGCACAAAGATCTTTACATGTGGATGGTGAAGTCCCCTGGTGGACCTTCCGTTAAGTTCTTGGTTAATGCTG
tcttgat putative branch site (score: 4)
ttcgtcttc putative PPT
tttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcagcatgtctgtagagtattaaactgcaaagtcaatgtattcttgatttcttcccagaaactgaagttagtacgtgtttgtttgtgttcgtcttcagTGTAGGAAGCACAAAGATCTTTACATGTGGATGGTGAAGTCCCCTGGTGGACCTTCCGTTAAGTTCTTGGTTAATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - attaaac
- - - - - - - - - - - - - - - -aagtcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt