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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttctactttgttgtttaagactttaagttgctttgtgtatacatttgttcaagttctagggttcttctcaatcttgtattggaagatactgactttacctttgtttgcatgaaatggtaatctttttttatttttattttttaaatacaactttgtagGTTCTATCTGATTCTGAATCGGTGCGGTGGTTGAATCATGCCGTGGAGAGGATATGGCCTATTTGTATGGAACAGATTGCTTCTCAGAAGATTCTTCGTC

Basic information

species Arabidopsis thaliana
transcript AT3G14590.3
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G14590.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv19s0138g00140.t01 (Vitis vinifera), 3'ss of exon 2
gtaattttctactttgttgtttaagactttaagttgctttgtgtatacatttgttcaagttctagggttcttctcaatcttgtattggaagatactgactttacctttgtttgcatgaaatggtaatctttttttatttttattttttaaatacaactttgtagGTTCTATCTGATTCTGAATCGGTGCGGTGGTTGAATCATGCCGTGGAGAGGATATGGCCTATTTGTATGGAACAGATTGCTTCTCAGAAGATTCTTCGTC
                                                  || | |   || | |      | | ||   |   ||| | | |   ||||| |    |   |   |||||    ||||||  |    | | || |||||  |     | | ||||| || ||||||||||| || |||||||||||||| ||||| || || | ||| ||||| || |||||||||||||||| ||| ||||| ||||| | ||
-------------------------------------------------attctccttattatgga-----tttgaaaactaagttg-aggctctagacttgattccttcataactgaaa----aatcttaatgctctatcatgttttattt-----tctttagGTACTTTCTGATTCTGAGTCAGTGCGGTGGTTGAACCATGCAGTTGAAAAGATTTGGCCCATATGTATGGAACAGATTGTTTCACAGAAAATTCTCCTTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgcatgaaatggtaatctttttttatttttattttttaaatacaactttgtagGTTCTATCTGATTCTGAATCGGTGCGGTGGTTGAATCATGCCGTGGAGAGGATATGGCCTATTTGTATGGAACAGATTGCTTCTCAGAAGATTCTTCGTC
     atgaaatggtaatctt  TA-rich tract