Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcactttttaatcataattcaatatcactttgttttcttcttttcttgtatccatgcttaatacatgtatctacttgcagAAAGTTACCAAGTCTTGGACTTTCTGGATCACTTGGATTCATGCTTGATAAATTGACTTCTGTTACTGAGTT

Basic information

species Arabidopsis thaliana
transcript AT3G14350.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116468521|gb|EG511113.1|EG511113
EST:     GGCCAAAACTGGAAAGGCATAACTTGCTCTGGCTCTCGAGTTACACAAAT                         AAAGTTACCAAGTCTTGGACTTTCTGGATCACTTGGATTCATGCTTGATAA
genomic: GGCCAAAACTGGAAAGGCATAACTTGCTCTGGCTCTCGAGTTACACAAATgtaatcactt ... ctacttgcagAAAGTTACCAAGTCTTGGACTTTCTGGATCACTTGGATTCATGCTTGATAA
EST: gi|116468522|gb|EG511114.1|EG511114
EST:     GGCCAAAACTGGAAAGGCATAACTTGCTCTGGCTCTCGAGTTACACAAAT                         AAAGTTACCAAGTCTTGGACTTTCTGGATCACTTGGATTCATGCTTGATAA
genomic: GGCCAAAACTGGAAAGGCATAACTTGCTCTGGCTCTCGAGTTACACAAATgtaatcactt ... ctacttgcagAAAGTTACCAAGTCTTGGACTTTCTGGATCACTTGGATTCATGCTTGATAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactttgttttcttcttttcttgtatccatgcttaatacatgtatctacttgcagAAAGTTACCAAGTCTTGGACTTTCTGGATCACTTGGATTCATGCTTGATAAATTGACTTCTGTTACTGAGTT
                              gcttaat  putative branch site (score: 4)
                                            tctactt  putative PPT
                                ttaatacat  TA-rich tract