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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttcttcctcttgttttgttctagaaattgcgtttctaagttttgttatgttatggattcttgtgtgtgtttctgatgttagacctgttggaatgttgattctacttgctcactttggttttgattgcagCTGTGTTCAATAAGCACTTTGGCAAGTACGGGGAGATTACAGATTCTGTCATTATGCGAGATCGACATACTGGACAACCTAGGGGTTTCGGTTTCATCAC

Basic information

species Arabidopsis thaliana
transcript AT3G13224.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86028496|gb|DR324249.1|DR324249
EST:     GAAAATATTCATTGGAGGATTGCACAAAGACACGACTAATA                         CTGTGTTCAATAAGCACTTTGGCAAGTACGGGGAGATTACAGATTCTGTCA
genomic: GAAAATATTCATTGGAGGATTGCACAAAGACACGACTAATAgtaagtttct ... ttgattgcagCTGTGTTCAATAAGCACTTTGGCAAGTACGGGGAGATTACAGATTCTGTCA
EST: gi|86028498|gb|DR324251.1|DR324251
EST:     GAAAATATTCATTGGAGGATTGCACAAAGACACGACTAATA                         CTGTGTTCAATAAGCACTTTGGCAAGTACGGGGAGATTACAGATTCTGTCA
genomic: GAAAATATTCATTGGAGGATTGCACAAAGACACGACTAATAgtaagtttct ... ttgattgcagCTGTGTTCAATAAGCACTTTGGCAAGTACGGGGAGATTACAGATTCTGTCA
EST: gi|86028497|gb|DR324250.1|DR324250
EST:     GAAAATATTCATTGGAGGATTGCACAAAGACACGACTAATA                         CTGTGTTCAATAAGCACTTTGGCAAGTACGGGGAGATTACAGATTCTGTCA
genomic: GAAAATATTCATTGGAGGATTGCACAAAGACACGACTAATAgtaagtttct ... ttgattgcagCTGTGTTCAATAAGCACTTTGGCAAGTACGGGGAGATTACAGATTCTGTCA
EST: gi|86028495|gb|DR324248.1|DR324248
EST:     GAAAATATTCATTGGAGGATTGCACAAAGACACGACTAATA                         CTGTGTTCAATAAGCACTTTGGCAAGTACGGGGAGATTACAGATTCTGTCA
genomic: GAAAATATTCATTGGAGGATTGCACAAAGACACGACTAATAgtaagtttct ... ttgattgcagCTGTGTTCAATAAGCACTTTGGCAAGTACGGGGAGATTACAGATTCTGTCA
EST: gi|86028499|gb|DR324252.1|DR324252
EST:     GAAAATATTCATTGGAGGATTGCACAAAGACACGACTAATA                         CTGTGTTCAATAAGCACTTTGGCAAGTACGGGGAGATTACAGATTCTGTCA
genomic: GAAAATATTCATTGGAGGATTGCACAAAGACACGACTAATAgtaagtttct ... ttgattgcagCTGTGTTCAATAAGCACTTTGGCAAGTACGGGGAGATTACAGATTCTGTCA
EST: gi|19877643|gb|AU238474.1|AU238474
EST:     GAAAATATTCATTGGAGGATTGCACAAAGACACGACTAATA                         CTGTGTTCAATAAGCACTTTGGCAAGTACGGGGAGATTACAGATTCTGTCA
genomic: GAAAATATTCATTGGAGGATTGCACAAAGACACGACTAATAgtaagtttct ... ttgattgcagCTGTGTTCAATAAGCACTTTGGCAAGTACGGGGAGATTACAGATTCTGTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttagacctgttggaatgttgattctacttgctcactttggttttgattgcagCTGTGTTCAATAAGCACTTTGGCAAGTACGGGGAGATTACAGATTCTGTCATTATGCGAGATCGACATACTGGACAACCTAGGGGTTTCGGTTTCATCAC
                                           ttttgatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtttcttcctcttgttttgttctagaaattgcgtttctaagttttgttatgttatggattcttgtgtgtgtttctgatgttagacctgttggaatgttgattctacttgctcactttggttttgattgcagCTGTGTTCAATAAGCACTTTGGCAAGTACGGGGAGATTACAGATTCTGTCATTATGCGAGATCGACATACTGGACAACCTAGGGGTTTCGGTTTCATCAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC