Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtatttttgttgcatatttatttatgaagaacttgatagtttctgctctcatttatcttgactgtaattttaatggcagTGCCTTGGTGACAAGAGCTTTGATAGAGAACACTCATTTGATCAAATGGAGTCTTGTACTAAAGGCACTTTCAGGTCTTCTTGCTCTTATTTGTGGGAAT

Basic information

species Arabidopsis thaliana
transcript AT3G11945.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124833942|gb|EH918381.1|EH918381
EST:     TCCGCGGAACAGCTTTAGGATCCAC                         TGCCTTGGTGACAAGAGCTTTGATAGAGAACACTCATTTGATCAAATGGAG
genomic: TCCGCGGAACAGCTTTAGGATCCACgtcagtattt ... ttaatggcagTGCCTTGGTGACAAGAGCTTTGATAGAGAACACTCATTTGATCAAATGGAG
EST: gi|124770327|gb|EH860457.1|EH860457
EST:     TGGAGATTTCTTAGACCCCATACAATCCGCGGAACAGCTTTAGGATCCAC                         TGCCTTGGTGA
genomic: TGGAGATTTCTTAGACCCCATACAATCCGCGGAACAGCTTTAGGATCCACgtcagtattt ... ttaatggcagTGCCTTGGTGA
EST: gi|86085149|gb|DR380908.1|DR380908
EST:     TGGAGATTTCTTAGACCCCATACAATCCGCGGAACAGCTTTAGGATCCAC                         TGCCTTGGTGACAAGAGCTTTGATAGAGAACACTCATTTGATCAAATGGAG
genomic: TGGAGATTTCTTAGACCCCATACAATCCGCGGAACAGCTTTAGGATCCACgtcagtattt ... ttaatggcagTGCCTTGGTGACAAGAGCTTTGATAGAGAACACTCATTTGATCAAATGGAG
EST: gi|125073376|gb|EL137732.1|EL137732
EST:     AACAGCTTTAGGATCCAC                         TGCCTTGGTGACAAGAGCTTTGATAGAGAACACTCATTTGATCAAATGGAG
genomic: AACAGCTTTAGGATCCACgtcagtattt ... ttaatggcagTGCCTTGGTGACAAGAGCTTTGATAGAGAACACTCATTTGATCAAATGGAG
EST: gi|124916881|gb|EH990755.1|EH990755
EST:     CAGCTTTAGGATCCAC                         TGCCTTGGTGACAAGAGCTTTGATAGAGAACACTCATTTGATCAAATGGAG
genomic: CAGCTTTAGGATCCACgtcagtattt ... ttaatggcagTGCCTTGGTGACAAGAGCTTTGATAGAGAACACTCATTTGATCAAATGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaagaacttgatagtttctgctctcatttatcttgactgtaattttaatggcagTGCCTTGGTGACAAGAGCTTTGATAGAGAACACTCATTTGATCAAATGGAGTCTTGTACTAAAGGCACTTTCAGGTCTTCTTGCTCTTATTTGTGGGAAT
                                           ttttaat  putative branch site (score: 3)
                                    actgtaattttaat  TA-rich tract