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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggttacttctctctttagacacttctctactttgttggctggatattggttttttgacctttgagaatctcttgttcctttagGTATCATTGAGCCTGCTTGAGCTTAGAACTACTCCAGAAACATCAGACTCGGCAGCACAAACCGCGGTTGTGCCTTTGCCTCTCCCATCTCCATCGCCAC

Basic information

species Arabidopsis thaliana
transcript AT3G11760.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116481179|gb|EG523771.1|EG523771
EST:     CACTTACGCTCTCTGCTTGTGTGGCCTCTGAGACACATCCTTTGCTCTTT                         GTATCATTGAGCCTGCTTGAGCTTAGAACTACTCCAGAAACATCAGACTCG
genomic: CACTTACGCTCTCTGCTTGTGTGGCCTCTGAGACACATCCTTTGCTCTTTgtatggttac ... gttcctttagGTATCATTGAGCCTGCTTGAGCTTAGAACTACTCCAGAAACATCAGACTCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttgttggctggatattggttttttgacctttgagaatctcttgttcctttagGTATCATTGAGCCTGCTTGAGCTTAGAACTACTCCAGAAACATCAGACTCGGCAGCACAAACCGCGGTTGTGCCTTTGCCTCTCCCATCTCCATCGCCAC
                       ttttgac  putative branch site (score: 3)
                                       tctcttgttccttt  putative PPT
                     ttttttga  TA-rich tract