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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtatttggaagttggagctctatcagtttttcttgttactttatatatttttaggtcgagttcagtgttggattgggagtttaacttggcctccttttactttggtgcagGATGTCCCTCCGTTGGATGTACCTGAACTGTTGGCATGTTTGGTTAGACAATCTGAACCTTTTCTTGATCAGATTGGTGTTAGAAAGG

Basic information

species Arabidopsis thaliana
transcript AT3G11670.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116444582|gb|EG487174.1|EG487174
EST:     AAATCAATTTACAAAGAAACTGATGAGGCTAAG                         GATGTCCCTCCGTTGGATGTACCTGAACTGTTGGCATG
genomic: AAATCAATTTACAAAGAAACTGATGAGGCTAAGgttggtattt ... tttggtgcagGATGTCCCTCCGTTGGATGTACCTGAACTGTTGGCATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgagttcagtgttggattgggagtttaacttggcctccttttactttggtgcagGATGTCCCTCCGTTGGATGTACCTGAACTGTTGGCATGTTTGGTTAGACAATCTGAACCTTTTCTTGATCAGATTGGTGTTAGAAAGG
                       gtttaac  putative branch site (score: 3)
                                  cctccttttacttt  putative PPT
                                       ttttacttt  TA-rich tract