Sequence
atgc intronic sequence ATGC exonic sequencegtatgtgtttggaattacctttggtgcattttttggtttctgtggtgatgatcttacactcaaattttgagttttaattgatagctttgcaacagATAAACCCTGAGAAGGCTAGGGAAGAGTTTCGTAGTGCCTCGCAGATGAATGGAGGAACTGGGGTGAAAGATTTTATGGATGGTATGGGACTTGGAATGC
Basic information
species | Arabidopsis thaliana |
transcript | AT3G10350.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G10350.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA20G32200.1 (Glycine max), 3'ss of exon 3
---------------------------------------------------------gtatgtgtttggaattacctttggtgcattttttggtttctgtggtgatgatcttacactcaaattttgagttttaattgatagctttgca-acagATAAACCCTGAGAAGGCTAGGGAAGAGTTTCGTAGTGCCTCGCAGATGAATGGAGGAACTGGGGTGAAAGATTTTATGGATGGTATGGGACTTGGAATGC
| || |||| ||| | | | | | | | | | || | | | |||| || || || | ||| ||||||||||||||||||| |||||||||||||||| | |||| | |||| ||||| |||||||| || ||||| || |||||||| ||||| |||||||||
gtaagttggcatttctgtataataaattggctgatatttagcatcctgtttacttgatgacatgattggcattttttgagattatgtgtgtaccatttaatataatacctctctccacttatttaagtttgtagttccttacttcatttacagATAAACCCTGAGAAGTCTAGGGAAGAGTTTCGAAATGCCGCCCAGAAAAATGGTGGAACTGGAGTCAAAGACTTCATGGATGGCATGGGTCTTGGAATGA
upper sequence: AT3G10350.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA10G35320.1 (Glycine max), 3'ss of exon 3
---------------------------------------------------------gtatgtgtttggaattacctttggtgcattttttggtttctgtggtgatgatcttacactcaaattttgagttttaattgatagctttgca-acagATAAACCCTGAGAAGGCTAGGGAAGAGTTTCGTAGTGCCTCGCAGATGAATGGAGGAACTGGGGTGAAAGATTTTATGGATGGTATGGGACTTGGAATGC
| || |||| ||| | | | | | | || | | | || | | | |||| || || || | ||| |||||| |||||||||||| |||||||||||||| | |||| | |||| || || ||||| || || ||||| || |||||||| ||||| |||||||||
gtaagttggcatttctgtataatagattggctgatatttagcatccggttttcttgatgacatgattggtattttttgagattgtgtgtgtagtatttaatataataccactctccacttatttaagtttgtagttccttacttcatttacagATTAACCCTGAGAAGTTTAGGGAAGAGTTTCAAAATGCCGCCCAGAAAAAGGGTGGAACCGGAGTCAAAGACTTCATGGATGGCATGGGCCTTGGAATGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtggtgatgatcttacactcaaattttgagttttaattgatagctttgcaacagATAAACCCTGAGAAGGCTAGGGAAGAGTTTCGTAGTGCCTCGCAGATGAATGGAGGAACTGGGGTGAAAGATTTTATGGATGGTATGGGACTTGGAATGC
aaattttgagttttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtgtttggaattacctttggtgcattttttggtttctgtggtgatgatcttacactcaaattttgagttttaattgatagctttgcaacagATAAACCCTGAGAAGGCTAGGGAAGAGTTTCGTAGTGCCTCGCAGATGAATGGAGGAACTGGGGTGAAAGATTTTATGGATGGTATGGGACTTGGAATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA