1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaagtcgaaataattaaagccatccttaatatttgattgtctagtctgaaaattgatgttgaagtccataaccatgttttttttgtgtgtgtgtcaatagGTGCCTCCTTTTGAGCGTCCTGAACTAACCAAGGTATATATTGACCTCGAAG
species | Arabidopsis thaliana |
transcript | AT3G09940.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTCCAAGGAACCA GTGCCTCCTTTTGAGCGTCCTGAACTAACCAAGGTATATATTGACCTCGAAEST: gi|116470475|gb|EG513067.1|EG513067
genomic: TTTCCAAGGAACCAgtacgttttt ... gtgtcaatagGTGCCTCCTTTTGAGCGTCCTGAACTAACCAAGGTATATATTGACCTCGAA
EST: GTAATCAGGGCCTGAAGCCTGGTGAACTCGCAATCATTTCCAAGGAACCA GTGCCTCCTTTTGAGCGTCCTGAACTAACCAAGGTATATATTGACCTCGAA
genomic: GTAATCAGGGCCTGAAGCCTGGTGAACTCGCAATCATTTCCAAGGAACCAgtacgttttt ... gtgtcaatagGTGCCTCCTTTTGAGCGTCCTGAACTAACCAAGGTATATATTGACCTCGAA
ctgaaaattgatgttgaagtccataaccatgttttttttgtgtgtgtgtcaatagGTGCCTCCTTTTGAGCGTCCTGAACTAACCAAGGTATATATTGACCTCGAAG
ccataac putative branch site (score: 3)
atgtttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagtcgaaataattaaagccatccttaatatttgattgtctagtctgaaaattgatgttgaagtccataaccatgttttttttgtgtgtgtgtcaatagGTGCCTCCTTTTGAGCGTCCTGAACTAACCAAGGTATATATTGACCTCGAAG
- - - gaaataa
- - - - - - - -aaagcca
- - - - - - - - - - - - - - - - - - - - - - -ctgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataacca