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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctacttgcacattgtcattctctaatatctactttaggctagaactattattaccatgatagttctgacttgttacaattctgaactcgcttcattatagGACTATTCCTTTTGCCTGGAATCTGATAACAAGCGGCTATTTTGAACTCTCAGTATATGGG

Basic information

species Arabidopsis thaliana
transcript AT3G07950.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301501412|gb|HO206952.1|HO206952
EST:     GTTCAGTTCATTCCCGCTACCGTCCCATACCTTGCTCTGATTCCGGCGAG                         GACTATTCCTTTTGCCTGGAATCTGATAACAAGCGGCTATTTTGAACTCTC
genomic: GTTCAGTTCATTCCCGCTACCGTCCCATACCTTGCTCTGATTCCGGCGAGgtacttcgtc ... ttcattatagGACTATTCCTTTTGCCTGGAATCTGATAACAAGCGGCTATTTTGAACTCTC
EST: gi|125133268|gb|EL174839.1|EL174839
EST:     GTTCAGTTCATTCCCGCTACCGTCCCATACCTTGCTCTGATTCCGGCGAG                         GACTATTCCTTTTGCCTGGAATCTGATAACAAGCGGCTATTTTGAACTCTC
genomic: GTTCAGTTCATTCCCGCTACCGTCCCATACCTTGCTCTGATTCCGGCGAGgtacttcgtc ... ttcattatagGACTATTCCTTTTGCCTGGAATCTGATAACAAGCGGCTATTTTGAACTCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattattaccatgatagttctgacttgttacaattctgaactcgcttcattatagGACTATTCCTTTTGCCTGGAATCTGATAACAAGCGGCTATTTTGAACTCTCAGTATATGGG
                 ttctgac  putative branch site (score: 2)
                                        ctcgcttc  putative PPT
                                             ttcattata  TA-rich tract