Sequence
atgc intronic sequence ATGC exonic sequencegtaaacctttcatcattttagtctaatttaaatgattcattggttgatgttttgttggtcctgattcttattaatttcacctgttgttatataatcagAAAAGCAGAAGAAGAGAAACAGCTTCATGGTTGAGAGAGAGTGTATTGCAGCTTGGTCCAACGTTTATCAAACTGGGACAGTTGTCTTCAACTAGGTCAG
Basic information
| species | Arabidopsis thaliana |
| transcript | AT3G07700.3 |
| intron # | 2 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G07700.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: LOC_Os09g07660.2 (Oryza sativa), 3'ss of exon 2
-----------------------------------------------------------------gtaaacctttcatcattttagtc----------taatttaaatgattcattggttgatgttttgttggtcct----gattcttattaatttcacctgttg-----------ttatataat-cagAAAAGCAGAAGAAGAGAAACAGCTTCATGGTTGAGAGAGAGTGTATTGCAGCTTGGTCCAACGTTTATCAAACTGGGACAGTTGTCTTCAACTAGGTCAG
| || || | | |||| || ||||| |||| ||| | || ||| | ||| ||||| || | || | ||||| |||||| | || || |||| ||||||||||| ||||| |||||||||||||| ||||| ||||| || || |||||||| ||||| || || || |
gtatgcttttatggtacaaataagctttagttaaagaattctgcattccctttaaagtttcctatgcgaaagctttaccttttttgtggagtaactggtaattataatggatcacagagatttgggttgctaaaatgaaaagatatttattttttgtatgcgtggactaaatcatcccatatatcacagAAAGTTCGGAGGAGGAAAACTGCTTCATGGTTAAGAGAACAAGTATTGCAGCTTGGCCCAACTTTTATTAAGCTTGGACAGTTATCTTCGACAAGATCTG
upper sequence: AT3G07700.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA02G47870.1 (Glycine max), 3'ss of exon 4
------------------------------------------------------------------------------gtaaacctttcatcatt--ttagtctaatttaaatgattcattggttgatgttttgttggtcctgattc---ttattaatttcacctgttgttata---taatcagAAAAGCAGAAGAAGAGAAACAGCTTCATGGTTGAGAGAGAGTGTATTGCAGCTTGGTCCAACGTTTATCAAACTGGGACAGTTGTCTTCAACTAGGTCAG
| | |||||| | | ||| ||| | | | || || | || |||||| || ||| || | | | | | || | ||| || | ||||||||||||| | |||| || |||||||| |||||| |||||||||||||||||||||| || || ||||| || ||||| || ||||| |||||||
gtacgtacgtaggttcttttcgtttcttgccaaaaataaaatactattttccttggccgtatttgcatttatttatgtattcatatttcatagctggtggaaataaattacaagtgttttta-ttattattcaattggtcatgtttctgtttgctgacctgaagttttttaatattttatttagAAAAGCAGAAGGCGGAAAACTGCCTCATGGTTAAGAGAGCGTGTATTGCAGCTTGGTCCAACTTTCATTAAACTTGGCCAGTTATCATCAACAAGGTCAG
upper sequence: AT3G07700.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA13G11270.1 (Glycine max), 3'ss of exon 2
---------------------------------------------------------------------------gtaaacctttcatcatt-ttagtctaatttaaatgattcattggttgatgttttgttggtcctgattcttattaatttcacctgttgttatataa----tcagAAAAGCAGAAGAAGAGAAACAGCTTCATGGTTGAGAGAGAGTGTATTGCAGCTTGGTCCAACGTTTATCAAACTGGGACAGTTGTCTTCAACTAGGTCAG
|||| |||| || | || | ||| | | | || || | || ||||| | || | | || | | || | |||| ||||||||||||||| | |||| ||| ||||| | || ||| ||||||| |||||||||||||| || || ||||| |||||||| || ||||| ||||| |
gtaggttccggaagctattttgttgccaaattcttctcttcctgactttaatcattgccggtggagaccctctcaacaaacatttctccagcactcatcccaattagttttgtaactgattaagtttctgttgtgtttttgctttgctgacttgaagtattttaatattgcatttcagAAAAGCAGAAGGCGGAAAACTGCTGCATGGCTAAGGGAGTGTGTATTACAGCTTGGTCCAACTTTCATTAAACTTGGACAGTTATCATCAACAAGGTCGG
upper sequence: AT3G07700.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA14G00750.1 (Glycine max), 3'ss of exon 2
-----------gtaaacctttcatcattttagtctaatttaaatgattcattggttgatgtttt---gttggtcctgattc---ttattaatttcacctgttgttatat----aatcagAAAAGCAGAAGAAGAGAAACAGCTTCATGGTTGAGAGAGAGTGTATTGCAGCTTGGTCCAACGTTTATCAAACTGGGACAGTTGTCTTCAACTAGGTCAG
| ||| | ||||| || | |||| | | | || | | || |||||| || ||| || | | | | | || | |||| | | ||||||||||||| | |||| || || ||||| || || |||||||||||||||||||||| || || ||||| || ||||| || ||||| |||||||
gttccatggtgacttgcatttatttatttttagctggtggaaataaattacaagtgtttttatttaaattggtcatgcttctttttgctgaccttaaattttttaatatttttatttagAAAAGCAGAAGGCGGAAAACTGCCTCGTGGTTAAGGAAGTGTGTATTGCAGCTTGGTCCAACTTTCATTAAACTTGGTCAGTTATCATCAACAAGGTCAG
upper sequence: AT3G07700.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv12s0057g01140.t01 (Vitis vinifera), 3'ss of exon 1
-----------------------------------------------------------------------------gtaaacctttcatcattttagtctaattta---aatgattcattggttgatg--ttttgttggtcctgatt------cttattaatttcacctgt-----tgttatataatcagAAAAGCAGAAGAAGAGAAACAGCTTCATGGTTGAGAGAGAGTGTATTGCAGCTTGGTCCAACGTTTATCAAACTGGGACAGTTGTCTTCAACTAGGTCAG
| | | || ||||| | | | | | || | || ||| || ||||| | | | | ||| | |||||| | | || | |||||||| |||||| |||| || ||||||||| | || |||| |||| ||||||||||| ||||||||||| || ||||| |||||||| |||||||
gtgagttttgttaatccattatggctgtgatcttttgcagcttgttaaactcctaaccatggttggataatagagatctgtttcacttgctgcttatgtctactatgcccattcttccacttatttatgggttatgttgattcaaaatatttagtttacttttttcactcataaaattctttctcattcagAAAAACAGAAGGCATAAAACTGCCTCATGGTTGCGGGAATGTGTTCTGCAACTTGGTCCAACTTTTATCAAACTTGGGCAGTTATCTTCAACAAGGTCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116471692|gb|EG514284.1|EG514284EST: TCGATAATTCGAAATGGGCTTATGTTGGAGGATTCACAGAAGAAAAACAG AAAAGCAGAAGAAGAGAAACAGCTTCATGGTTGAGAGAGAGTGTATTGCAG
genomic: TCGATAATTCGAAATGGGCTTATGTTGGAGGATTCACAGAAGAAAAACAGgtaaaccttt ... atataatcagAAAAGCAGAAGAAGAGAAACAGCTTCATGGTTGAGAGAGAGTGTATTGCAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgatgttttgttggtcctgattcttattaatttcacctgttgttatataatcagAAAAGCAGAAGAAGAGAAACAGCTTCATGGTTGAGAGAGAGTGTATTGCAGCTTGGTCCAACGTTTATCAAACTGGGACAGTTGTCTTCAACTAGGTCAG
tattaat putative branch site (score: 2)
tgattcttattaattt TA-rich tract
