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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttttgtcccgtatacccgagttcgatgtgtcacttaatctcttgtctgaaatttgttcctgtgaccaaatcttgaatgttgttactaacagGGGATGTTACTTTCAAGAAGGAGAAGAAGTAAAATTGAAGATGAATGTAGATGATGCTTATAAGCGAGCTCTGAATACCGTTGTGAAATGGATACATACC

Basic information

species Arabidopsis thaliana
transcript AT3G06080.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124707462|gb|EH798864.1|EH798864
EST:     TTAGTGCTCAATACTGGACACTGGTGGAACGAGGGGAAAACTACTAGAAC                         GGGATGTTACTT
genomic: TTAGTGCTCAATACTGGACACTGGTGGAACGAGGGGAAAACTACTAGAACgtaagttttt ... ttactaacagGGGATGTTACTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctcttgtctgaaatttgttcctgtgaccaaatcttgaatgttgttactaacagGGGATGTTACTTTCAAGAAGGAGAAGAAGTAAAATTGAAGATGAATGTAGATGATGCTTATAAGCGAGCTCTGAATACCGTTGTGAAATGGATACATACC
 acttaat  putative branch site (score: 4)
            aaatttgtt  TA-rich tract