Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcaactagttttcttatcttatttttggtattttcctacagagtcttacctatttgatttgaattctaactgttgtgttaccatatcatgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTGATCTTGACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTA

Basic information

species Arabidopsis thaliana
transcript AT3G05530.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G05530.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: LOC_Os06g07630.1 (Oryza sativa), 3'ss of exon 2
gtattcaactagttttcttatcttatttttggtattttcctacagagtcttacctatttgatttgaattctaactgttgtgttaccatatcatgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTGATCTTGACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTA
|   | | |     ||  | | |   | ||  | |   ||||  |  |   | | |||   | |     | |  || | | |     | |||     ||||||| |||| ||||| || || ||||| |||||||| |||||||| ||||||||| | ||||| ||| |||||||||||||||||||  |||| || || |
gctattaccagaaattgctgtttccctattaatgtga-cctattgttttggaacaattgcgtattgtaaccatatggtttctgcttttctcaactgtttagATTCTGGAAATGAACCCTGAGGATGAAGCTGAGGAGGATGGTGCTAATATTGATTTAGACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACTTCCA

upper sequence: AT3G05530.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: LOC_Os02g56000.1 (Oryza sativa), 3'ss of exon 2
gtattcaactagttttcttatcttatttttggtattttcctacagagtctta--cctatttgatt-tgaattctaactgttgtgttaccatatcatgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTGATCTTGACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTA
    ||   | |  | |||       |    | |   | || |  |||  ||   ||    |||| ||    | || |     |||   |  || |  | | |||| ||||| ||||| || || ||||| ||||| || |||||||| || || ||||| || || ||| ||||||||||||| ||||| ||||| || || |
---gtcttttcgagtccttgagaatgtcagagcagaattcttcgtagttctaattctgcaagattgtgggggcaaatttacaagttcttacttcctatt-tcagATATTGGAAATGAACCCCGAGGATGAGGCTGAAGAGGATGGTGCGAACATCGATCTGGATTCACAAAGGAAAGGAAAATGCGTTGTTTTGAAGACATCCA

upper sequence: AT3G05530.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GRMZM2G027282_T01 (Zea mays), 3'ss of exon 2
gtattcaactagttttcttatctta---tttttggtattttc-----ctacagagtcttacctatttgatttgaattctaactgttgtgttaccatatcatgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTGATCTTGACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTA
      ||    ||||| ||| | |   |||||   || |       || || |  |  |  |    ||| ||   || |    || | | ||      |   | |||||||||||| ||||| || || ||||| ||||| ||||||||||| || || ||||| ||||| ||| |||||||||||||||||||  |||| || || |
-----taa--gattttcatatttcaaagtttttaagatgtaaggaagctgcata-cccaaggtggacgatatgggctccattacttatat-acatctcaactgttttagATTTTGGAAATGAACCCTGAGGATGAGGCTGAAGAAGATGGTGCTAACATCGATCTGGACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACATCCA

upper sequence: AT3G05530.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GRMZM2G032505_T03 (Zea mays), 3'ss of exon 2
gtattcaactagttttcttatcttatttttggtattttcctacagagtcttacctatttgatttgaattctaactgttgtgttaccatatcatgc-tattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTGATCTTGACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTA
 |     | || ||    | | | |     ||| | |    |     | ||   | | ||  || | |  ||       ||      | |||    | |||||| ||||| ||||| || || ||||| |||||||| |||||||| || |||||| | ||||| ||| |||||||||||||||||||  |||| || || |
-ttccatattatttggtctttgtcaggcagggtgtctgtacattatttattttgtttctgggtt-actcatatacagcctgcctttttctcaactattttagATCTTGGAAATGAACCCTGAGGATGAAGCTGAGGAGGATGGTGCTAACATTGATTTAGACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCA

upper sequence: AT3G05530.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA10G29250.1 (Glycine max), 3'ss of exon 2
-----------------------------------gtattcaa-----ctagttttcttatctta---tttttggtattt-tcctacagagtcttacct--atttgatttga--attct--aactgttgtgttaccatatcatgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTGATCTTGACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTA
                                   |||||         | |  ||   ||  |     || ||| ||   |   | | |||  |  ||  ||||  | | |   ||||   | | |   || |  |  |  |||  |||||| ||||| ||||| |||||||| || ||||| ||||||||||| ||||||||||||||||| ||| |||| ||||| ||||||||| | || || ||||
gtagctacattgtttgtttctctgttttggatgttgtatttgggatttttgggctttgaattctgaatcttgtggaatggatggaaaaaagttgtttcttgattttttctcattgttcttggattatgacgtgataactttttgcatttagATATTGGAAATGAACCCAGAAGACGAAGCTGAAGAAGATGGTGCCAATATTGATCTTGACTCACAAAGGAAGGGAAAGTGTGTTGTGCTAAAGACTTCTA

upper sequence: AT3G05530.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA03G39500.1 (Glycine max), 3'ss of exon 2
gtattcaactagttttcttatcttatttttggtattt-tcctacagagtc--ttacctatttgatttg-aattctaactgttgtgttaccatatcat-gctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTGATCTTGACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTA
      || |   |  | | |   ||||   | |  | |  |   || ||  ||   | ||   |    |||  |     || ||  |  ||||  | | | | |||| ||||| || |||||||||||||| || || ||||||||| | || |||||||||||||| ||| |||||||||||||||||||| | || || ||||
------aattgactgacctctacaatttcaaggacctgtagtggtgattcacttgttttttcattccctaatgttccaaattctgacatgatatttttgttttcagATATTGGAAATAAATCCAGAAGATGAAGCAGAAGAAGATGGTTCCAACATTGATCTTGACTCCCAAAGGAAAGGAAAATGTGTTGTGCTAAAGACATCTA

upper sequence: AT3G05530.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA20G38030.1 (Glycine max), 3'ss of exon 2
-----------------------------------gtattcaa----ctagttttcttatctt--atttttggtattttcctacagagtcttacctatttgatttgaa------ttc--taactgttgtgttaccatatcatgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTGATCTTGACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTA
                                   |||||        | |  || | ||  |  || ||  | | |       | |   ||   | ||   ||| ||      |||  | | | |   || |  || |  |||  |||||| ||||| ||||| || ||||| || ||||| ||||||||||| ||||||||||||||||| ||| |||| ||||| ||||||||| | || || ||||
gtacctatattgtttgtttctctgttttggatattgtattgggatttttggacttttaattctgaatcttctggaatggatggaaaaaagttgtttcttgatttttaaacatttttcattgattatgacgtgataattttttgcatttagATATTGGAAATGAACCCGGAAGACGAAGCTGAAGAAGATGGTGCCAATATTGATCTTGACTCACAAAGGAAGGGAAAGTGTGTTGTGCTAAAGACTTCTA

upper sequence: AT3G05530.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 2
---gtattcaactagttttcttatcttatttttggtattttcctacagagtcttacctatttgatttgaattctaactgttgtgttaccatatcatgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTGATCTTGACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTA
   | | |     |||   |     | |||   | |    | ||  ||   |||     | | | |  | || |   | |  | || |    | ||| | |||||| ||||| ||||| ||||| ||||| || |||||||||||||||||||||||||||||||| ||  |||| |||||||||||||| |||||||| ||||
ataggaattggtgagtgaacaggcttaattgaagctgaagttct--agtaacttggt--tctcactacatttttttttttcttttttctggttaatgtttttagATCTTGGAAATGAACCCAGAGGATGACGCAGAGGAAGATGGTGCAAATATTGATCTTGACTCTCAGAGGAAGGGAAAATGTGTTGTTTTGAAAACATCTA

upper sequence: AT3G05530.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: PP1S340_7V6.1 (Physcomitrella patens), 3'ss of exon 2
gtattcaactagttttcttatcttatttttggtattttcctacagagtcttacctatttgatttgaattctaactgttgtgttaccatatcatgctat-tagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTGATCTTGACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTA
      || ||| | || | | ||  ||       ||   | | |  | |            |||     ||  | ||  |||    |    |||  |  |||| |||||  | |||||||||||||| ||||| || |||||||| ||| ||||| | ||||| ||| ||| |||||| ||||| || ||||| || || |
-cgagaaagtagctctcgtgtttttattccacagcttaattcctgtttttcgttgcaaccggttgtcagatattttttaagttgat-ttcggtgccctgcagATATTGGACGTCAATCCAGAAGATGAAGCTGAAGAGGATGGTGCTAATGTTGATTTGGACTCTCAAAGGAGAGGAAAGTGTGTCGTCTTGAAGACATCCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86071052|gb|DR366809.1|DR366809
EST:     AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG                         ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: gi|86071034|gb|DR366791.1|DR366791
EST:     AGATTAAACTNAACAAGCAGCTGNCTTACTTGGTTGGCNACATTGNCGAG                         ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGG
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGG
EST: gi|301502331|gb|HO207871.1|HO207871
EST:     AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG                         ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: gi|86071039|gb|DR366796.1|DR366796
EST:     AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG                         ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATAAT
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: gi|86071062|gb|DR366819.1|DR366819
EST:     AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG                         ATTTTGGAGATGAATCCAGAAGATGAAGCTGAGGAAGATGGTGCAAATATT
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: gi|86071059|gb|DR366816.1|DR366816
EST:     AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG                         ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: gi|86071028|gb|DR366785.1|DR366785
EST:     AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG                         ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: gi|86071063|gb|DR366820.1|DR366820
EST:     AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG                         ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: gi|86071044|gb|DR366801.1|DR366801
EST:     AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG                         ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: gi|86071050|gb|DR366807.1|DR366807
EST:     AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG                         ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: gi|86071057|gb|DR366814.1|DR366814
EST:     AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG                         ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: gi|86071046|gb|DR366803.1|DR366803
EST:     AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG                         ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: gi|86071049|gb|DR366806.1|DR366806
EST:     AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG                         ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: gi|125076450|gb|EL139599.1|EL139599
EST:     AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG                         ATTTTGGAGATGAATCCAGAAGATGATGCT
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCT
EST: gi|86071047|gb|DR366804.1|DR366804
EST:     AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG                         ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: gi|86071045|gb|DR366802.1|DR366802
EST:     AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG                         ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: gi|86071048|gb|DR366805.1|DR366805
EST:     AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG                         ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: gi|86071065|gb|DR366822.1|DR366822
EST:     AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG                         ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: gi|86071055|gb|DR366812.1|DR366812
EST:     AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG                         ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: gi|86071061|gb|DR366818.1|DR366818
EST:     AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG                         ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: gi|86071056|gb|DR366813.1|DR366813
EST:     AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG                         ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: gi|86071040|gb|DR366797.1|DR366797
EST:     AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG                         ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: gi|86071033|gb|DR366790.1|DR366790
EST:     AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG                         ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: gi|86071064|gb|DR366821.1|DR366821
EST:     GATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTTGTCGAG                         ATTTTGGAGATGAATCCAGAANATGATGCTGAGGAAGATGGTGCAAATAT
genomic: GATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATT-GTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATAT
EST: gi|124951310|gb|EL026692.1|EL026692
EST:     AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG                         ATTTTGGAGATGAAT
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAAT
EST: gi|86071038|gb|DR366795.1|DR366795
EST:     AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG                         ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: gi|86071036|gb|DR366793.1|DR366793
EST:     AGATTAAACTCAACAAGCAGCTGCCTTACTTGGNTGGCAACATTGGCGAG                         ATTTTGGAGATGAATCC
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCC
EST: gi|86071035|gb|DR366792.1|DR366792
EST:     AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG                         ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: gi|86071053|gb|DR366810.1|DR366810
EST:     AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG                         ATTTTGGAGATGAATCCAGAAGATGATGCTGGAGGAAGATGGTGCAAATAT
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTG-AGGAAGATGGTGCAAATAT
EST: gi|86071054|gb|DR366811.1|DR366811
EST:     AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG                         ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: gi|86071029|gb|DR366786.1|DR366786
EST:     AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG                         ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: gi|86071037|gb|DR366794.1|DR366794
EST:     AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG                         ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: gi|86071030|gb|DR366787.1|DR366787
EST:     AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG                         ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: gi|86071060|gb|DR366817.1|DR366817
EST:     AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG                         ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcttacctatttgatttgaattctaactgttgtgttaccatatcatgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTGATCTTGACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTA
                     ttctaac  putative branch site (score: 1)
        tatttgatttgaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtattcaactagttttcttatcttatttttggtattttcctacagagtcttacctatttgatttgaattctaactgttgtgttaccatatcatgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTGATCTTGACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA