1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gttagtttttttacaccaatatggtttattgccatcaggagttgtgttactctttgtttgatttattttctagttccttcgtattatacattaagacatgacttgaaatagtttgaagttataagacatctccttctcaactcaatcctgatgatgttcttcttatgttatttgcaagctgcagCATTGTGCTGGCATAAATTGCTTGGATGTGTTGAAGTCGTCTGTTTCTAATGATCAAAGCTACCTCTTCACTGGAAGTCGTGATGGTACACTCAAGAGAT
species | Arabidopsis thaliana |
transcript | AT3G05090.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAAAGAGAAAAAGCTTACTTATGTGTTAAATGATGCCAACGATACAAAG CATTGTGCTGGCATAAATTGCTTGGATGTGTTGAAGTCGTCTGTTTCTAATEST: gi|116407304|gb|EG449896.1|EG449896
genomic: GCAAAGAGAAAAAGCTTACTTATGTGTTAAATGATGCCAACGATACAAAGgttagttttt ... caagctgcagCATTGTGCTGGCATAAATTGCTTGGATGTGTTGAAGTCGTCTGTTTCTAAT
EST: GCAAAGAGAAAAAGCTTACTTATGTGTTAAATGATGCCAACGATACAAAG CATTGTGCTGGCATAAATTGCTTGGATGTGTTGAAGTCGTCTGTTTCTAATEST: gi|116449111|gb|EG491703.1|EG491703
genomic: GCAAAGAGAAAAAGCTTACTTATGTGTTAAATGATGCCAACGATACAAAGgttagttttt ... caagctgcagCATTGTGCTGGCATAAATTGCTTGGATGTGTTGAAGTCGTCTGTTTCTAAT
EST: GCAAAGAGAAAAAGCTTACTTATGTGTTAAATGATGCCAACGATACAAAG CATTGTGCTGGCATAAATTGCTTGGATGTGTTGAAGTCGTCTGTTTCTAATEST: gi|116407303|gb|EG449895.1|EG449895
genomic: GCAAAGAGAAAAAGCTTACTTATGTGTTAAATGATGCCAACGATACAAAGgttagttttt ... caagctgcagCATTGTGCTGGCATAAATTGCTTGGATGTGTTGAAGTCGTCTGTTTCTAAT
EST: GCAAAGAGAAAAAGCTTACTTATGTGTTAAATGATGCCAACGATACAAAG CATTGTGCTGGCATAAATTGCTTGGATGTGTTGAAGTCGTCTGTTTCTAATEST: gi|116407307|gb|EG449899.1|EG449899
genomic: GCAAAGAGAAAAAGCTTACTTATGTGTTAAATGATGCCAACGATACAAAGgttagttttt ... caagctgcagCATTGTGCTGGCATAAATTGCTTGGATGTGTTGAAGTCGTCTGTTTCTAAT
EST: GCAAAGAGAAAAAGCTTACTTATGTGTTAAATGATGCCAACGATACAAAG CATTGTGCTGGCATAAATTGCTTGGATGTGTTGAAGTCGTCTGTTTCTAATEST: gi|86063685|gb|DR359442.1|DR359442
genomic: GCAAAGAGAAAAAGCTTACTTATGTGTTAAATGATGCCAACGATACAAAGgttagttttt ... caagctgcagCATTGTGCTGGCATAAATTGCTTGGATGTGTTGAAGTCGTCTGTTTCTAAT
EST: GCAAAGAGAAAAAGCTTACTTATGTGTTAAATGATGCCAACGATACAAAG CATTGTGCTGGCATAAATTGCTTGGATGTGTCTGAAGTCGTCTGTTTCTAAEST: gi|125089532|gb|EL147862.1|EL147862
genomic: GCAAAGAGAAAAAGCTTACTTATGTGTTAAATGATGCCAACGATACAAAGgttagttttt ... caagctgcagCATTGTGCTGGCATAAATTGCTTGGATGTGT-TGAAGTCGTCTGTTTCTAA
EST: GCAAAGAGAAAAAGCTTACTTATGTGTTAAATGATGCCAACGATACAAAG CATTGTGCTGGCATAAATTGCTTGGATGTGTTGA
genomic: GCAAAGAGAAAAAGCTTACTTATGTGTTAAATGATGCCAACGATACAAAGgttagttttt ... caagctgcagCATTGTGCTGGCATAAATTGCTTGGATGTGTTGA
ctccttctcaactcaatcctgatgatgttcttcttatgttatttgcaagctgcagCATTGTGCTGGCATAAATTGCTTGGATGTGTTGAAGTCGTCTGTTTCTAATGATCAAAGCTACCTCTTCACTGGAAGTCGTGATGGTACACTCAAGAGAT
tcctgat putative branch site (score: 3)
ttcttatgttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtttttttacaccaatatggtttattgccatcaggagttgtgttactctttgtttgatttattttctagttccttcgtattatacattaagacatgacttgaaatagtttgaagttataagacatctccttctcaactcaatcctgatgatgttcttcttatgttatttgcaagctgcagCATTGTGCTGGCATAAATTGCTTGGATGTGTTGAAGTCGTCTGTTTCTAATGATCAAAGCTACCTCTTCACTGGAAGTCGTGATGGTACACTCAAGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA