1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtagatttgtgttcataactgttagatacactttctgatatatagatagatatacttccttgaggtatattgacatgatcttagttctgcattagatcatgtgtccactacagttgatatatgcaaacttgtattgtctggttactcaactacagtcagtttaatttcttcacggttttcattcttcctttcagGCAATTTATCTGTTTGGCTTTGGAGTACCATTGTTTATCGACAACAATGAACATATACATAAGTTCAAATGGGGCTTATGGGTCATCCACAAGCTCTTAC
species | Arabidopsis thaliana |
transcript | AT3G05010.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CATTGGTCTCGATTTGCTTCTCAAG GCAATTTATCTGTTTGGCTTTGGAGTACCATTGTTTATCGACAACAEST: gi|124991905|gb|EL064174.1|EL064174
genomic: CATTGGTCTCGATTTGCTTCTCAAGgtagatttgt ... ttcctttcagGCAATTTATCTGTTTGGCTTTGGAGTACCATTGTTTATCGACAACA
EST: GAACTTTCCTCATCTCGGGGCTTGTCATTGGTCTCGATTTGCTTCTCAAG GCAATTTATCT
genomic: GAACTTTCCTCATCTCGGGGCTTGTCATTGGTCTCGATTTGCTTCTCAAGgtagatttgt ... ttcctttcagGCAATTTATCT
ggttactcaactacagtcagtttaatttcttcacggttttcattcttcctttcagGCAATTTATCTGTTTGGCTTTGGAGTACCATTGTTTATCGACAACAATGAACATATACATAAGTTCAAATGGGGCTTATGGGTCATCCACAAGCTCTTAC
gtttaat putative branch site (score: 4)
tttcttcacggttttc CT-rich tract
tttaatttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagatttgtgttcataactgttagatacactttctgatatatagatagatatacttccttgaggtatattgacatgatcttagttctgcattagatcatgtgtccactacagttgatatatgcaaacttgtattgtctggttactcaactacagtcagtttaatttcttcacggttttcattcttcctttcagGCAATTTATCTGTTTGGCTTTGGAGTACCATTGTTTATCGACAACAATGAACATATACATAAGTTCAAATGGGGCTTATGGGTCATCCACAAGCTCTTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT