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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagataactgggattttacctgaacaaagaccaaaactcttcttgtgtgtgttattcacagatggaatgtttctcttcagGGTACTTTTGTATTACAAGACAACAAGTTCCGGTGGTTGTCTCGTGTCTCAATTGACCCTTCATCTGAGAATGAAACCCAAGATCCTTCTACTCCAGGGG

Basic information

species Arabidopsis thaliana
transcript AT3G05000.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86086179|gb|DR381938.1|DR381938
EST:     GGTCTGAGGTCTTCAAGAAGCAGATTGATAATTTAAAGACAAATCACCGG                         GGTACTTTTGTATTACAAGACAACAAGTTCCGGTGGTTGTCTCGTGTCTCA
genomic: GGTCTGAGGTCTTCAAGAAGCAGATTGATAATTTAAAGACAAATCACCGGgtaagataac ... ttctcttcagGGTACTTTTGTATTACAAGACAACAAGTTCCGGTGGTTGTCTCGTGTCTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagaccaaaactcttcttgtgtgtgttattcacagatggaatgtttctcttcagGGTACTTTTGTATTACAAGACAACAAGTTCCGGTGGTTGTCTCGTGTCTCAATTGACCCTTCATCTGAGAATGAAACCCAAGATCCTTCTACTCCAGGGG
                                          tgtttctcttc  CT-rich tract
                        tgttatt  TA-rich tract