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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatatataaacatcttctggtataagatttcaataactttatgtcgattttgatataagtttccttttgttgtttcggttgcagGGGATACTATAAATGCAGCAGTGTGAGAGGTTGTCCAGCAAGGAAGCATGTGGAGCGATGTATTGATGAAACTTCAATGTTAATTGTAACTTACGAAGGC

Basic information

species Arabidopsis thaliana
transcript AT3G04670.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125266726|gb|EL280811.1|EL280811
EST:     TCTTGGAGGAAGTATGGACAGAAACCGATAAAGGGTTCACCGCATCCACG                         GGGATACTATAAATGCAGCAG
genomic: TCTTGGAGGAAGTATGGACAGAAACCGATAAAGGGTTCACCGCATCCACGgtatatatat ... tcggttgcagGGGATACTATAAATGCAGCAG
EST: gi|86086972|gb|DR382731.1|DR382731
EST:     TYTTGGAGGAAGTATGGACAGAAACCGATAAAGGGTTCMCCGCATCCACG                         GGGATACTATAAATGCAGCAGTGTGAGAGGTTGTCCAGCAAGGAAGCATGT
genomic: TCTTGGAGGAAGTATGGACAGAAACCGATAAAGGGTTCACCGCATCCACGgtatatatat ... tcggttgcagGGGATACTATAAATGCAGCAGTGTGAGAGGTTGTCCAGCAAGGAAGCATGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaataactttatgtcgattttgatataagtttccttttgttgtttcggttgcagGGGATACTATAAATGCAGCAGTGTGAGAGGTTGTCCAGCAAGGAAGCATGTGGAGCGATGTATTGATGAAACTTCAATGTTAATTGTAACTTACGAAGGC
                              tttccttttgttgttt  CT-rich tract
                 attttgatataagttt  TA-rich tract