1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgaaattttggaaaactcactctttccttagagattttattggacgatttgatgtgaatgtgtttttgtgtttttatttttggttttccgggcagAGAGTTGTTAAGGTTTTGGAACTAGCTGGTGGAGTGATGGAAGAACTCGCGAGCCCTTCTGGTCCCAAGAAAGAGTTCGTCAACAGCCATTGCCGAGAGT
species | Arabidopsis thaliana |
transcript | AT3G01435.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCCGCAGACGCAGAACACTTCGTTGCAGCGACTCCAGAATGTTGAGAAT AGAGTTGTTAAGGTTTTGGAACTAGCTGGTGGAGTGATGGAAGAACTCGCGEST: gi|47830714|gb|CK120398.1|CK120398
genomic: ATCCGCAGACGCAGAACACTTCGTTGCAGCGACTCCAGAATGTTGAGAATgtgaaatttt ... ttccgggcagAGAGTTGTTAAGGTTTTGGAACTAGCTGGTGGAGTGATGGAAGAACTCGCG
EST: ATCCGCAGACGCAGAACACTTCGTTGCAGCGACTCCAGAATGTTGAGAAT AGAGTTGTTAAGGTTTTGGAACTAGCTGGTGGAGTGATGGAAGAACTCGCGEST: gi|86086183|gb|DR381942.1|DR381942
genomic: ATCCGCAGACGCAGAACACTTCGTTGCAGCGACTCCAGAATGTTGAGAATgtgaaatttt ... ttccgggcagAGAGTTGTTAAGGTTTTGGAACTAGCTGGTGGAGTGATGGAAGAACTCGCG
EST: ATCCGCAGACGCAGAWCACTTCGTTGCAGCGACTCCAGAATGTTGAGAAT AGAGTTGTTAAGGTTTTGGAACTAGCTGGTGGAGTGMTGGAAGAACTCGCG
genomic: ATCCGCAGACGCAGAACACTTCGTTGCAGCGACTCCAGAATGTTGAGAATgtgaaatttt ... ttccgggcagAGAGTTGTTAAGGTTTTGGAACTAGCTGGTGGAGTGATGGAAGAACTCGCG
tggacgatttgatgtgaatgtgtttttgtgtttttatttttggttttccgggcagAGAGTTGTTAAGGTTTTGGAACTAGCTGGTGGAGTGATGGAAGAACTCGCGAGCCCTTCTGGTCCCAAGAAAGAGTTCGTCAACAGCCATTGCCGAGAGT
atttgat putative branch site (score: 5)
ttttcc putative PPT
tgtttttgtgttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaattttggaaaactcactctttccttagagattttattggacgatttgatgtgaatgtgtttttgtgtttttatttttggttttccgggcagAGAGTTGTTAAGGTTTTGGAACTAGCTGGTGGAGTGATGGAAGAACTCGCGAGCCCTTCTGGTCCCAAGAAAGAGTTCGTCAACAGCCATTGCCGAGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA