Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164010298|gb|ES047164.1|ES047164EST: CGAATACAAAGCTCAAACAGAGCAAGACTTCCAGAAGGAAACTTGAGGAG ACAAGCGGAGACTCTGGT
genomic: CGAATACAAAGCTCAAACAGAGCAAGACTTCCAGA-GGAAACTTGAGGAGgtaaatgatt ... ttgaaaacagACAAGCGGAGACTCTGGT
EST:
gi|164015733|gb|ES056694.1|ES056694EST: GACTTCCAGAGGAAACTTGAGGAG ACAAGCGGAGACTCTGGTGCGAATGTGAAGAGGCTGGAGCAAGAGACTGAT
genomic: GACTTCCAGAGGAAACTTGAGGAGgtaaatgatt ... ttgaaaacagACAAGCGGAGACTCTGGTGCGAATGTGAAGAGGCTGGAGCAAGAGACTGAT
EST:
gi|164236084|gb|ES158093.1|ES158093EST: GAAACTTGAGGAG ACAAGCGGAGACTCTGGTGCGAATGTGAAGAGGCTGGAGCAAGAGACTGAT
genomic: GAAACTTGAGGAGgtaaatgatt ... ttgaaaacagACAAGCGGAGACTCTGGTGCGAATGTGAAGAGGCTGGAGCAAGAGACTGAT
EST:
gi|164048792|gb|ES168144.1|ES168144EST: TCCAGAGGAAACTTGAGGAG ACAAGCGGAGACTCTGGTGTGAATGTGAAGAGGCTGGAGCAAGAGACTGAT
genomic: TCCAGAGGAAACTTGAGGAGgtaaatgatt ... ttgaaaacagACAAGCGGAGACTCTGGTGCGAATGTGAAGAGGCTGGAGCAAGAGACTGAT
EST:
gi|125215527|gb|EL229611.1|EL229611EST: AGGAAACTTGAGGAG ACAAGCGGAGACTCTGGTGCGAATGTGAAGAGGCTGGAGCAAGAGACTGAT
genomic: AGGAAACTTGAGGAGgtaaatgatt ... ttgaaaacagACAAGCGGAGACTCTGGTGCGAATGTGAAGAGGCTGGAGCAAGAGACTGAT
EST:
gi|124949635|gb|EL025200.1|EL025200EST: CTCAAACAGAGCAAGACTTCCAGAGGAAACTTGAGGAG ACAAGCGGAGACTCTGGTGCGAATGTGAAGAGGCTGGAGCAAGAGACTGAT
genomic: CTCAAACAGAGCAAGACTTCCAGAGGAAACTTGAGGAGgtaaatgatt ... ttgaaaacagACAAGCGGAGACTCTGGTGCGAATGTGAAGAGGCTGGAGCAAGAGACTGAT
EST:
gi|125301578|gb|EL315663.1|EL315663EST: CCGAATACAAAGCTCAAACAGAGCAAGACTTCCAGAGGAAACTTGAGGAG ACAAGCGGAGACTCTGGT
genomic: CCGAATACAAAGCTCAAACAGAGCAAGACTTCCAGAGGAAACTTGAGGAGgtaaatgatt ... ttgaaaacagACAAGCGGAGACTCTGGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttagacaacctaaaatgtagtgtcctcactctaattatcatattgttgaaaacagACAAGCGGAGACTCTGGTGCGAATGTGAAGAGGCTGGAGCAAGAGACTGATACCAAAATCGAGCAGTTGAAGAACGAAGCATCGAGGATTTCCAAAGATG
taattatcatattgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaatgattttttaaaaagagaaaattgttcttagacaacctaaaatgtagtgtcctcactctaattatcatattgttgaaaacagACAAGCGGAGACTCTGGTGCGAATGTGAAGAGGCTGGAGCAAGAGACTGATACCAAAATCGAGCAGTTGAAGAACGAAGCATCGAGGATTTCCAAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG