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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaatgcggctccgaggttctgttttcccttttttttgtttgtttgttgctcgtctttcgcgtttttctactgaccaacagattccgattacacggctccatgatgaccggtttgtcttttttttactacgtgtgttctcgctcatacattccttgttgttgttgctttatagGTTTTCTCAGCTCCCATGGGGGAAATTCTCGACAGACTCCAGTCTTTTGGTGAATTTGAG

Basic information

species Arabidopsis thaliana
transcript AT3G01310.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116449078|gb|EG491670.1|EG491670
EST:     GTGGTGTTGGTGAGAAGATAAAGATTGGAGTCTGCGTCATGGAAAAGAAG                         GTTTTCTCAGCTCCCATGGGGGAAATTCTCGACAGACTCCAGTCTTTTGGT
genomic: GTGGTGTTGGTGAGAAGATAAAGATTGGAGTCTGCGTCATGGAAAAGAAGgtgaaatgcg ... tgctttatagGTTTTCTCAGCTCCCATGGGGGAAATTCTCGACAGACTCCAGTCTTTTGGT
EST: gi|116448301|gb|EG490893.1|EG490893
EST:     GTGGTGTTGGTGAGAAGATAAAGATTGGAGTCTGCGTCATGGAAAAGAAG                         GTTTTCTCACCTCCCATGGGGGAAATTCTCGACAGACTCCAGTCTTTTGGT
genomic: GTGGTGTTGGTGAGAAGATAAAGATTGGAGTCTGCGTCATGGAAAAGAAGgtgaaatgcg ... tgctttatagGTTTTCTCAGCTCCCATGGGGGAAATTCTCGACAGACTCCAGTCTTTTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttactacgtgtgttctcgctcatacattccttgttgttgttgctttatagGTTTTCTCAGCTCCCATGGGGGAAATTCTCGACAGACTCCAGTCTTTTGGTGAATTTGAG
                                            ttgcttt  CT-rich tract
                                                tttata  TA-rich tract