1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...gagtctattattctcagttttcgtcgcttttttcagttacggttgattagctgatgtttactttctcaaacttactttggttcttgctttattttgccagGATACCGTTTTCAGAGGAGGCATTGGCTATTATGGCCCATTTTCATCTTTTCCTTTGCAGTATTTCTTGCTCAAGTGGTCTACCTTGTCATTTGGGCTGC
species | Arabidopsis thaliana |
transcript | AT2G48060.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTTGATTTGATAGCTTTCCTCCTCGTTCACTATATTGCACCTGAAATTG GATACCGTTTTCAGAGGAGGCATTGGCTATTATGGCCCATTTTCATCTTTTEST: gi|116402646|gb|EG445238.1|EG445238
genomic: TCTTGATTTGATAGCTTTCCTCCTCGTTCACTATATTGCACCTGAAATTGgtaagcctgt ... attttgccagGATACCGTTTTCAGAGGAGGCATTGGCTATTATGGCCCATTTTCATCTTTT
EST: TCTTGATTTGATAGCTTTCCTCCTCGTTCACTATATTGCACCTGAAATTG GATACCGTTTTCAGAGAAGGCATTGGCTATTATGGCCCATTTTCATCTTTTEST: gi|116402647|gb|EG445239.1|EG445239
genomic: TCTTGATTTGATAGCTTTCCTCCTCGTTCACTATATTGCACCTGAAATTGgtaagcctgt ... attttgccagGATACCGTTTTCAGAGGAGGCATTGGCTATTATGGCCCATTTTCATCTTTT
EST: TCTTGATTTGATAGCTTTCCTCCTCGTTCACTATATTGCACCTGAAATTG GATACCGTTTTCAGAGAAGGCATTGGCTATTATGGCCCATTTTCATCTTTT
genomic: TCTTGATTTGATAGCTTTCCTCCTCGTTCACTATATTGCACCTGAAATTGgtaagcctgt ... attttgccagGATACCGTTTTCAGAGGAGGCATTGGCTATTATGGCCCATTTTCATCTTTT
attagctgatgtttactttctcaaacttactttggttcttgctttattttgccagGATACCGTTTTCAGAGGAGGCATTGGCTATTATGGCCCATTTTCATCTTTTCCTTTGCAGTATTTCTTGCTCAAGTGGTCTACCTTGTCATTTGGGCTGC
aacttac putative branch site (score: 2)
ttcttgctttatttt putative PPT
tttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagtctattattctcagttttcgtcgcttttttcagttacggttgattagctgatgtttactttctcaaacttactttggttcttgctttattttgccagGATACCGTTTTCAGAGGAGGCATTGGCTATTATGGCCCATTTTCATCTTTTCCTTTGCAGTATTTCTTGCTCAAGTGGTCTACCTTGTCATTTGGGCTGC
- - - - - ttctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaactta