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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgagtatcccatcacattctctctttactttataaatgacttgtgtgcttatccaggctaatcgtttttccctacttccttttagCCGGGTCCTAGAGGATCACTTGTTCAATGCTATATTATGAGAAACCGCAGCAATCAAACCTACTATCTATACCTCGGGTTAAACCAAG

Basic information

species Arabidopsis thaliana
transcript AT2G47900.2
intron # 2
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataaatgacttgtgtgcttatccaggctaatcgtttttccctacttccttttagCCGGGTCCTAGAGGATCACTTGTTCAATGCTATATTATGAGAAACCGCAGCAATCAAACCTACTATCTATACCTCGGGTTAAACCAAG
                         ggctaat  putative branch site (score: 3)
                               tcgtttttccctactt  CT-rich tract
                                  ttttt  TA-rich tract