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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactatcattatcttcatcttcttgacttatagaacaatatctcctttcagtttcttctactgtgtccgagttttcaggacaatatttggctttttcccccttattgatgacttttatgcaattatcctgttgcatgcagGTCGAAAATTCTGTTCAAAACTGCTGGAGTTCTGTTGGATGAAATGCTAGACAAGGGGTTGAATGCACTAAAGTACAAGGTTATCATTCTTGATGAAGTG

Basic information

species Arabidopsis thaliana
transcript AT2G47680.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G47680.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv07s0005g00310.t01 (Vitis vinifera), 3'ss of exon 2
gtaactatcattatcttcatcttcttgacttatagaacaatatctcctttcagtttcttctactgtgtccgagttttcaggacaatatttggctttttcccccttattgatgacttttatgcaattatcctgttgcatgcagGTCGAAAATTCTGTTCAAAACTGCTGGAGTTCTGTTGGATGAAATGCTAGACAAGGGGTTGAATGCACTAAAGTACAAGGTTATCATTCTTGATGAAGTG
                   |  || ||   |    || | | | |  |  || |||||| ||       |  ||||     |||||                ||  ||||  | |||| |    | ||  |||  ||  ||| || |||||  | || ||||||||||||||| ||||||||||||||| ||| |||||||  || |||||  | ||||| ||||| |||||||||||||||
-------------------ttctcctggtgttctcaatactttttgat--cactttcttttataaaaatcatgtttattaaacaat---------------tctatttgagtaattttct----taatattgtatca--cagATCAAAAATAGTTTTTAAAACTGCTGGAGTTTTGTTGGATGAAATGCGAGAAAAGGGGTCAAAAGCACTTGAATACAAAGTTATAATTCTTGATGAAGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggctttttcccccttattgatgacttttatgcaattatcctgttgcatgcagGTCGAAAATTCTGTTCAAAACTGCTGGAGTTCTGTTGGATGAAATGCTAGACAAGGGGTTGAATGCACTAAAGTACAAGGTTATCATTCTTGATGAAGTG
                 tattgat  putative branch site (score: 3)
                                        tcctgtt  putative PPT
                           ttttatgcaattat  TA-rich tract