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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgcagttatttccttattatttctaaaagccgctttcttcattacacataataaaactgaacaagttggtggtgattttgtgcagGTTATGGAATGGAGTGTAGCGACTCCATGAAAG

Basic information

species Arabidopsis thaliana
transcript AT2G47630.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86040706|gb|DR336461.1|DR336461
EST:     GATCCCATCTTCTTCGTCTTCTCCCAAAGCTCTGGTTTTCCTCTGCCATG                         GTTATGGAATGGAGTGTAGCR-CATCCATGAAAG
genomic: GATCCCATCTTCTTCGTCTTCTCCCAAAGCTCTGGTTTTCCTCTGCCATGgttgcagtta ... ttttgtgcagGTTATGGAATGGAGTGTAGCGAC-TCCATGAAAG
EST: gi|86040705|gb|DR336460.1|DR336460
EST:     GATCCCATCTTCTTCGTCTTCTCCCAAAGCTCTGGTTTTCCTCTGCCATG                         GTTATGGAATGGAGTGTAGCGACTCCATGAAAG
genomic: GATCCCATCTTCTTCGTCTTCTCCCAAAGCTCTGGTTTTCCTCTGCCATGgttgcagtta ... ttttgtgcagGTTATGGAATGGAGTGTAGCGACTCCATGAAAG
EST: gi|86040708|gb|DR336463.1|DR336463
EST:     GATCCCATCTTCTTCGTCTTCTCCCAAAGCTCTGGTTTTCCTCTGCCATG                         GTTATGGAATGGAGTGTAGCGACTCCATGAAAG
genomic: GATCCCATCTTCTTCGTCTTCTCCCAAAGCTCTGGTTTTCCTCTGCCATGgttgcagtta ... ttttgtgcagGTTATGGAATGGAGTGTAGCGACTCCATGAAAG
EST: gi|86040701|gb|DR336456.1|DR336456
EST:     GATCCCATCTTCTTCGTCTTCTCCCAAAGCTCTGGTTTTCCTCTGCCATG                         GTTATGGAATGGAGTGTAGCGACTCCATGAAAG
genomic: GATCCCATCTTCTTCGTCTTCTCCCAAAGCTCTGGTTTTCCTCTGCCATGgttgcagtta ... ttttgtgcagGTTATGGAATGGAGTGTAGCGACTCCATGAAAG
EST: gi|86040707|gb|DR336462.1|DR336462
EST:     GATCCCATCTTCTTCGTCTTCTCCCAAAGCTCTGGTTTTCCTCTGCCATG                         GTTATGGAATGGAGTGTAGCGACTTCCATGAAAG
genomic: GATCCCATCTTCTTCGTCTTCTCCCAAAGCTCTGGTTTTCCTCTGCCATGgttgcagtta ... ttttgtgcagGTTATGGAATGGAGTGTAGCGAC-TCCATGAAAG
EST: gi|86040702|gb|DR336457.1|DR336457
EST:     GATCCCATCTTCTTCGTCTTCTCCCAAAGCTCTGGTTTTCCTCTGCCATG                         GTTATGGAATGGAGTGTAGCGACTTCCATGAAAG
genomic: GATCCCATCTTCTTCGTCTTCTCCCAAAGCTCTGGTTTTCCTCTGCCATGgttgcagtta ... ttttgtgcagGTTATGGAATGGAGTGTAGCGAC-TCCATGAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgctttcttcattacacataataaaactgaacaagttggtggtgattttgtgcagGTTATGGAATGGAGTGTAGCGACTCCATGAAAG
          attacacataataaaa  TA-rich tract