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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctctaccctcttctgttccgtgaaaatttcggattagtttggaaaagagtttgatataatgtgtgattgtttatttaccttaagGCAGAAGGAATTTTCCGAATAAATCCAGACAACGGCAAAGAAGAGCATGTCCGTAGACAGTTGAACTGTGGTGTGGTACCACGTGGAATTGATGTTCATT

Basic information

species Arabidopsis thaliana
transcript AT2G46710.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124897543|gb|EH973757.1|EH973757
EST:     TCCTTCTCAGGATGCAAAAACGTCTATACACTGAAGGAGGTCTTAAA                         GCAGAAGGAATTTTCCGAATAAATCCAGACAACGGCAAAGAAGAGCATGTC
genomic: TCCTTCTCAGGATGCAAAAACGTCTATACACTGAAGGAGGTCTTAAAgtaagtctct ... ttaccttaagGCAGAAGGAATTTTCCGAATAAATCCAGACAACGGCAAAGAAGAGCATGTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggattagtttggaaaagagtttgatataatgtgtgattgtttatttaccttaagGCAGAAGGAATTTTCCGAATAAATCCAGACAACGGCAAAGAAGAGCATGTCCGTAGACAGTTGAACTGTGGTGTGGTACCACGTGGAATTGATGTTCATT
                   gtttgat  putative branch site (score: 5)
                                            tttacctt  putative PPT
                                  tgattgtttattta  TA-rich tract