Sequence
atgc intronic sequence ATGC exonic sequencegtgattatcattcattcatcatctgggaatttcaaagttttaatttttcttttgctatatttgctaaatcctatgtctctgtttttgtttacagAGCATATTACAGATGCACGCATCGATTCACACAAGACTGTTTAGCAGTGAAGCAAGTTCAGAAATCAGACACAGATCCTTCCCTTTTCGAAGTGAAGTAT
Basic information
species | Arabidopsis thaliana |
transcript | AT2G46400.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|301502066|gb|HO207606.1|HO207606EST: TGCTGGAGAAAATATGGGCAAAAAGAGATTCATGGATCCAAAAATCCTAG AGCATATTACAGATGCACGCATCGATTCACACAAGACTGTTTAGCAGTGAA
genomic: TGCTGGAGAAAATATGGGCAAAAAGAGATTCATGGATCCAAAAATCCTAGgtgattatca ... ttgtttacagAGCATATTACAGATGCACGCATCGATTCACACAAGACTGTTTAGCAGTGAA
EST:
gi|301502509|gb|HO208049.1|HO208049EST: TGCTGGAGAAAATATGGGCAAAAAGAGATTCATGGATCCAAAAATCCTAG AGCATATTACAGATGCACGCATCGATTCACACAAGACTGTTTAGCAGTGAA
genomic: TGCTGGAGAAAATATGGGCAAAAAGAGATTCATGGATCCAAAAATCCTAGgtgattatca ... ttgtttacagAGCATATTACAGATGCACGCATCGATTCACACAAGACTGTTTAGCAGTGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttaatttttcttttgctatatttgctaaatcctatgtctctgtttttgtttacagAGCATATTACAGATGCACGCATCGATTCACACAAGACTGTTTAGCAGTGAAGCAAGTTCAGAAATCAGACACAGATCCTTCCCTTTTCGAAGTGAAGTAT
tgctaaa putative branch site (score: 2)
tctctgtttttgttt putative PPT
tatatttgctaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgattatcattcattcatcatctgggaatttcaaagttttaatttttcttttgctatatttgctaaatcctatgtctctgtttttgtttacagAGCATATTACAGATGCACGCATCGATTCACACAAGACTGTTTAGCAGTGAAGCAAGTTCAGAAATCAGACACAGATCCTTCCCTTTTCGAAGTGAAGTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG