1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtggtctcagcctctcaaattcaaatagtatatagtggatggaatggattcagtttaggatttaagtcgttgtctttgttgttttagtctttcatagcttaacgattagtgttttgtttgtgatttcttagGAGACTCGTCTAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGTGGGATGTGAAATCTGGCAAAGAATTGTTCACTTTCAAGTTTGGTGCCCC
species | Arabidopsis thaliana |
transcript | AT2G46290.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGCACTTACCGTGGCCACAGTGGTGCTGTTTGGTGCTGTGATATCTCCA GAGACTCGTCTAGATTGATCACTGGTAGTGCTGATCAGACCGCAAAGCTGTEST: gi|86040339|gb|DR336094.1|DR336094
genomic: TGGCACTTACCGTGGCCACAGTGGTGCTGTTTGGTGCTGTGATATCTCCAgtaagtggtc ... gatttcttagGAGACTCGTCTAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: GGCACTTACCGTGGCCACAGTGGTCGCTGTTTGGTGSTGTGATATCTCCA GAGACTCGTCTAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGTEST: gi|86040336|gb|DR336091.1|DR336091
genomic: GGCACTTACCGTGGCCACAGTGGT-GCTGTTTGGTGCTGTGATATCTCCAgtaagtggtc ... gatttcttagGAGACTCGTCTAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: TGGCACTTACCGTGGCCACAGTGGTGCTGTTTGGTGCTGTGATATCTCCA GAGACTCGTCTAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGTEST: gi|19878991|gb|AU239822.1|AU239822
genomic: TGGCACTTACCGTGGCCACAGTGGTGCTGTTTGGTGCTGTGATATCTCCAgtaagtggtc ... gatttcttagGAGACTCGTCTAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: TGGCACTTACCGTGGCCACAGTGGTGCTGTTTGGTGCTGTGATATCTCCA GAGACTCGTCTAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGTEST: gi|116426849|gb|EG469441.1|EG469441
genomic: TGGCACTTACCGTGGCCACAGTGGTGCTGTTTGGTGCTGTGATATCTCCAgtaagtggtc ... gatttcttagGAGACTCGTCTAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: TGGCACTTACCGTGGCCACAGTGGTGCTGTTTGGTGCTGTGATATCTCCA GAGACTCGTCTAGATTGATCACTGGTAGTGCTGATCAGACCGCAAAGCTGTEST: gi|86040340|gb|DR336095.1|DR336095
genomic: TGGCACTTACCGTGGCCACAGTGGTGCTGTTTGGTGCTGTGATATCTCCAgtaagtggtc ... gatttcttagGAGACTCGTCTAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: TGGCACTTACCGTGGCCACAGTGGTGCTGTTTGGTGCTGTGATATCTCCA GAGACTCGTCTAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGTEST: gi|116426850|gb|EG469442.1|EG469442
genomic: TGGCACTTACCGTGGCCACAGTGGTGCTGTTTGGTGCTGTGATATCTCCAgtaagtggtc ... gatttcttagGAGACTCGTCTAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: TGGCACTTACCGTGGCCACAGTGGTGCTGTTTGGTGCTGTGATATCTCCA GAGACTCGTCTAGATTGATCACTGGTAGTGCTGATCAGACCGCAAAGCTGTEST: gi|116426846|gb|EG469438.1|EG469438
genomic: TGGCACTTACCGTGGCCACAGTGGTGCTGTTTGGTGCTGTGATATCTCCAgtaagtggtc ... gatttcttagGAGACTCGTCTAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: TGGCACTTACCGTGGCCACAGTGGTGCTGTTTGGTGCTGTGATATCTCCA GAGACTCGTCTAGATTGATCACTGGTAGTGCTGATCAGACCGCAAAGCTGTEST: gi|164114555|gb|ES175478.1|ES175478
genomic: TGGCACTTACCGTGGCCACAGTGGTGCTGTTTGGTGCTGTGATATCTCCAgtaagtggtc ... gatttcttagGAGACTCGTCTAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: TGATATCTCCCA GAGACTCGTCTAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGEST: gi|86040338|gb|DR336093.1|DR336093
genomic: TGATATCT-CCAgtaagtggtc ... gatttcttagGAGACTCGTCTAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTG
EST: TGGCACTTACCGTGGCCACAGTGGTGCTGTTTGGNGCTGTGATATCTCCA GAGACTCGTCTAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGCACTTACCGTGGCCACAGTGGTGCTGTTTGGTGCTGTGATATCTCCAgtaagtggtc ... gatttcttagGAGACTCGTCTAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
tgttgttttagtctttcatagcttaacgattagtgttttgtttgtgatttcttagGAGACTCGTCTAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGTGGGATGTGAAATCTGGCAAAGAATTGTTCACTTTCAAGTTTGGTGCCCC
gcttaac putative branch site (score: 3)
tttctt putative PPT
ttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtggtctcagcctctcaaattcaaatagtatatagtggatggaatggattcagtttaggatttaagtcgttgtctttgttgttttagtctttcatagcttaacgattagtgttttgtttgtgatttcttagGAGACTCGTCTAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGTGGGATGTGAAATCTGGCAAAGAATTGTTCACTTTCAAGTTTGGTGCCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA