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gtaagtgtaatcgatcaatactggattctagatgttagagaattagcttgaattttgaatctataatggattgataatcagGACGAGAATATTGCGACATATGGCTACTGAGCTGAGATTGAACATGAGAGGTGATGGTTTTGTTAAAGTTGAAGATTTACTTAACCTGAATTTGAAAACT
species | Arabidopsis thaliana |
transcript | AT2G45330.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCGACGGTGGAGGCGGAAAGGATAGAATCGATGCACTTGGACGACTCTT GACGAGAATATTGCGACATATGGCTACTGAGCTGAGATTGAACATGAGAGGEST: gi|86024310|gb|DR320063.1|DR320063
genomic: GGCGACGGTGGAGGCGGAAAGGATAGAATCGATGCACTTGGACGACTCTTgtaagtgtaa ... tgataatcagGACGAGAATATTGCGACATATGGCTACTGAGCTGAGATTGAACATGAGAGG
EST: GGCGACGGTGGAGGCGGAAAGGATAGAATCGATGCACTTGGACGACTCTT GACGAGAATATTGCGACATATGGCTACTGAGCTGAGATTGAACATGAGAGGEST: gi|125165953|gb|EL191980.1|EL191980
genomic: GGCGACGGTGGAGGCGGAAAGGATAGAATCGATGCACTTGGACGACTCTTgtaagtgtaa ... tgataatcagGACGAGAATATTGCGACATATGGCTACTGAGCTGAGATTGAACATGAGAGG
EST: GGCGACGGTGGAGGCGGAAAGGATAGAATCGATGCACTTGGACGACTCTT GACGAGAATATTGCGACATATGGCTACTGAGCTGAGATTGAAEST: gi|86024311|gb|DR320064.1|DR320064
genomic: GGCGACGGTGGAGGCGGAAAGGATAGAATCGATGCACTTGGACGACTCTTgtaagtgtaa ... tgataatcagGACGAGAATATTGCGACATATGGCTACTGAGCTGAGATTGAA
EST: GGCGACGGTGGAGGCGGAAAGGATAGAATCGATGCACTTGGACGACTCTT GACGAGAATATTGCGACATATGGCTACTGAGCTGAGATTGAACATGAGAGG
genomic: GGCGACGGTGGAGGCGGAAAGGATAGAATCGATGCACTTGGACGACTCTTgtaagtgtaa ... tgataatcagGACGAGAATATTGCGACATATGGCTACTGAGCTGAGATTGAACATGAGAGG
tctagatgttagagaattagcttgaattttgaatctataatggattgataatcagGACGAGAATATTGCGACATATGGCTACTGAGCTGAGATTGAACATGAGAGGTGATGGTTTTGTTAAAGTTGAAGATTTACTTAACCTGAATTTGAAAACT
gattgat putative branch site (score: 4)
aattttgaatctataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgtaatcgatcaatactggattctagatgttagagaattagcttgaattttgaatctataatggattgataatcagGACGAGAATATTGCGACATATGGCTACTGAGCTGAGATTGAACATGAGAGGTGATGGTTTTGTTAAAGTTGAAGATTTACTTAACCTGAATTTGAAAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA