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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactactcttcatgagtatctgtcatatctcatgaattgtttcactcaatcttattctgttggactggtgcaatgacagATCACGCCATTGACAACATTTGCAATGGTATTACTAGCTATATCTCCATGTCTCATCAAAGCCTGGAAAAAACCACACTCGGGGCTCGTTGCTAGATGGG

Basic information

species Arabidopsis thaliana
transcript AT2G44660.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164043635|gb|ES174842.1|ES174842
EST:     GTTCTTCCTCAG                         ATCACGCCATTGACAACATTTGCAATGGTATTACTAGCTATATCTCCATGT
genomic: GTTCTTCCTCAGgtactactct ... gcaatgacagATCACGCCATTGACAACATTTGCAATGGTATTACTAGCTATATCTCCATGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatctcatgaattgtttcactcaatcttattctgttggactggtgcaatgacagATCACGCCATTGACAACATTTGCAATGGTATTACTAGCTATATCTCCATGTCTCATCAAAGCCTGGAAAAAACCACACTCGGGGCTCGTTGCTAGATGGG
                       aatcttatt  TA-rich tract