Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataaagcaacactcttttgttcatctttgctgactaagatgactgttctgttcatggttgttgtaatgaatcatgatatattatttgcatgcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGG

Basic information

species Arabidopsis thaliana
transcript AT2G44120.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G44120.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv09s0054g00010.t01 (Vitis vinifera), 3'ss of exon 1
gtaataaagcaacactcttttgttcatctttgctgactaagatgactgttctgttcatggttgttgtaatgaatc-atgatatattatttgcatgcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGG
||| |     |    | | |  |  || | |  |  ||    |    ||   | |   ||| ||| |||  |||  | || | ||  ||| |||||      || | || ||| |||| | ||||||||| ||||||||| |||| || || || ||||||||||| ||||||||  | || ||||| ||||||||||||||
gtactctcatagttttgtctcatgtatttgt-ttttctgttttactcgtgaagatttaggtagttttaactaatagacgacacat--ttttcatgc------agCAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86036885|gb|DR332640.1|DR332640
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
EST: gi|86036872|gb|DR332627.1|DR332627
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
EST: gi|164169163|gb|ES007753.1|ES007753
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAACGAGTTGATCCGATTGAAGCGGGAGGCT
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCT
EST: gi|86036886|gb|DR332641.1|DR332641
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
EST: gi|86036883|gb|DR332638.1|DR332638
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCARAGAATACGCTGAGAAG                         GATAACTAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
EST: gi|86036875|gb|DR332630.1|DR332630
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
EST: gi|86036881|gb|DR332636.1|DR332636
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
EST: gi|86036876|gb|DR332631.1|DR332631
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
EST: gi|164103379|gb|ES021299.1|ES021299
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAACGAGTTGATCCGATTGAAGCGGGAGGCTA
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTA
EST: gi|86036880|gb|DR332635.1|DR332635
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
EST: gi|86036879|gb|DR332634.1|DR332634
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
EST: gi|86036882|gb|DR332637.1|DR332637
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
EST: gi|86036873|gb|DR332628.1|DR332628
EST:     A-CTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
EST: gi|86036877|gb|DR332632.1|DR332632
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
EST: gi|152035827|gb|BP862892.2|BP862892
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAAGGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
EST: gi|86036878|gb|DR332633.1|DR332633
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
EST: gi|86036874|gb|DR332629.1|DR332629
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
EST: gi|124717990|gb|EH809392.1|EH809392
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAACGAGTTGATCC
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgttcatggttgttgtaatgaatcatgatatattatttgcatgcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGG
                                              cttgttt  CT-rich tract
                  taatgaatcatgatat  TA-rich tract