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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtctctctctcttcttgttgtttgagacaagaacatgagcactctgtgatattgtttcctgttatatctgtgtttgtagGCACCCATTGAGATCCCTGCTTCTTCTGATAAATTCTGGTTTTTGACGAAAGATCGTGCATTTTCACTTCCTTCTCCGTTTGATAACAAGGGAAACTACG

Basic information

species Arabidopsis thaliana
transcript AT2G43400.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G43400.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv05s0102g01110.t01 (Vitis vinifera), 3'ss of exon 2
-----------gtttgtctctctctcttcttgttgtttgagac--aagaacatgagcactctgt-gatatt---gtttcctgttatatctgtgtttgtagGCACCCATTGAGATCCCTGCTTCTTCTGATAAATTCTGGTTTTTGACGAAAGATCGTGCATTTTCACTTCCTTCTCCGTTTGATAACAAGGGAAACTACG
           ||||   |     |     |||| || || |   |  ||| | | |     || |||  |    | |  | ||    |  | |||| ||||||| ||  |  |||||| ||||||||||||||| ||| || | || || |||||||||||||||||||| || || ||||||||||| || || ||  
tgtataggcatgttttattgctggtggatctgtttttggaaattgacaaactttatcttctggtcgattcttatatgtttttttgcgacattatttgcagGCACCAATCAATGTCCCTGTTTCTTCTGATAAATTTTGGCTTCTTACAAAGGATCGTGCATTTTCACTTCCATCCCCATTTGATAACAAAGGGAATTATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agacaagaacatgagcactctgtgatattgtttcctgttatatctgtgtttgtagGCACCCATTGAGATCCCTGCTTCTTCTGATAAATTCTGGTTTTTGACGAAAGATCGTGCATTTTCACTTCCTTCTCCGTTTGATAACAAGGGAAACTACG
                        atattgttt  TA-rich tract