1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tatttgtttgcttcagtggctcattgagtttgcatctgtgattgtttctgatgattttcagtttactgaatcatataatgtcttttgttttgtctaaaagGTTCAAGAATGCTACGAAGTTGCAGCTGATTACGATGGAAACCGCAACACTGAGAAGCTTGAGGAGCTTGGAAATATGCTGACGAGTTTGGATCCAGGGG
species | Arabidopsis thaliana |
transcript | AT2G42600.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATTTCTCGATATTCTTCAGGATTTGCATGGCGAGGATGTCAGAGAATTC GTTCAAGAATGCTACGAAGTTGCAGCTGATTACGATGGAAACCGCAACACTEST: gi|86068707|gb|DR364464.1|DR364464
genomic: GATTTCTCGATATTCTTCAGGATTTGCATGGCGAGGATGTCAGAGAATTCgtatgttttc ... tgtctaaaagGTTCAAGAATGCTACGAAGTTGCAGCTGATTACGATGGAAACCGCAACACT
EST: GATTTCTCGATATTCTTCAGGATTTGCATGGCGAGGATGTCAGAGAATTC GTTCAAGAATGCTACGAAGTTGCAGCTGATTACGATGGAAAEST: gi|86068624|gb|DR364381.1|DR364381
genomic: GATTTCTCGATATTCTTCAGGATTTGCATGGCGAGGATGTCAGAGAATTCgtatgttttc ... tgtctaaaagGTTCAAGAATGCTACGAAGTTGCAGCTGATTACGATGGAAA
EST: GATTTCTCGATATTCTTCAGGATTTGCATGGCGAGGATGTCAGAGAATTC GTTCAAGAATGCTACGAAGTTGCAGCTGATTACGATGGAAACCGCAACACTEST: gi|86068657|gb|DR364414.1|DR364414
genomic: GATTTCTCGATATTCTTCAGGATTTGCATGGCGAGGATGTCAGAGAATTCgtatgttttc ... tgtctaaaagGTTCAAGAATGCTACGAAGTTGCAGCTGATTACGATGGAAACCGCAACACT
EST: GATTTCTCGATATTCTTCAGGATTTGCATGGCGAGGATGTCAGAGAATTC GTTCAAGAATGCTACGAAGTTGCAGCTGATTACGATGGAAACCGCAACACTEST: gi|116477131|gb|EG519723.1|EG519723
genomic: GATTTCTCGATATTCTTCAGGATTTGCATGGCGAGGATGTCAGAGAATTCgtatgttttc ... tgtctaaaagGTTCAAGAATGCTACGAAGTTGCAGCTGATTACGATGGAAACCGCAACACT
EST: GATTTCTCGATATTCTTCAGGATTTGCATGGCGAGGATGTCAGAGAATTC GTTCAAGAATGCTACGAAGTTGCAGCTGATTACGATGGAAACCGCAACACTEST: gi|86068606|gb|DR364363.1|DR364363
genomic: GATTTCTCGATATTCTTCAGGATTTGCATGGCGAGGATGTCAGAGAATTCgtatgttttc ... tgtctaaaagGTTCAAGAATGCTACGAAGTTGCAGCTGATTACGATGGAAACCGCAACACT
EST: GATTTCTCGATATTCTTCAGGATTTGCATGGCGAGGATGTCAGAGAATTC GTTCAAGAATGCTACGAAGTTGCAGCTGATTACGATGGAAACCGCAACACT
genomic: GATTTCTCGATATTCTTCAGGATTTGCATGGCGAGGATGTCAGAGAATTCgtatgttttc ... tgtctaaaagGTTCAAGAATGCTACGAAGTTGCAGCTGATTACGATGGAAACCGCAACACT
ttctgatgattttcagtttactgaatcatataatgtcttttgttttgtctaaaagGTTCAAGAATGCTACGAAGTTGCAGCTGATTACGATGGAAACCGCAACACTGAGAAGCTTGAGGAGCTTGGAAATATGCTGACGAGTTTGGATCCAGGGG
ttctgat putative branch site (score: 3)
tcttttgttttgtct putative PPT
atataatgtctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttgtttgcttcagtggctcattgagtttgcatctgtgattgtttctgatgattttcagtttactgaatcatataatgtcttttgttttgtctaaaagGTTCAAGAATGCTACGAAGTTGCAGCTGATTACGATGGAAACCGCAACACTGAGAAGCTTGAGGAGCTTGGAAATATGCTGACGAGTTTGGATCCAGGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - -ttgcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgaatc